MotifZNF12.H12CORE.1.M.C
Gene (human)ZNF12
(GeneCards)
Gene synonyms (human)GIOT3, KOX3, ZNF325
Gene (mouse)Znf12
Gene synonyms (mouse)Zfp12
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length21
ConsensusvhGCWATAACGAGYAbSMCYn
GC content52.4%
Information content (bits; total / per base)21.712 / 1.034
Data sourcesMethyl-HT-SELEX
Aligned words8588

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (4) 0.845 0.857 0.81 0.822 0.822 0.839 4.262 4.461 137.634 181.032

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.828 0.832 0.674 0.693 0.586 0.613
best 0.97 0.97 0.76 0.785 0.625 0.666
Methyl HT-SELEX, 1 experiments median 0.97 0.97 0.76 0.785 0.625 0.666
best 0.97 0.97 0.76 0.785 0.625 0.666
Non-Methyl HT-SELEX, 1 experiments median 0.685 0.694 0.588 0.602 0.548 0.56
best 0.685 0.694 0.588 0.602 0.548 0.56
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF12-like {2.3.3.81} (TFClass)
TFClass IDTFClass: 2.3.3.81.1
HGNCHGNC:12902
MGIMGI:99157
EntrezGene (human)GeneID:7559
(SSTAR profile)
EntrezGene (mouse)GeneID:231866
(SSTAR profile)
UniProt ID (human)ZNF12_HUMAN
UniProt ID (mouse)ZNF12_MOUSE
UniProt AC (human)P17014
(TFClass)
UniProt AC (mouse)Q7TSI0
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
013340.752412.751939.75894.75
021291.53544.51002.52749.5
03157.0392.07660.0379.0
041100.07146.0121.0221.0
051570.0506.0318.06194.0
066305.090.02053.0140.0
07347.0815.016.07410.0
088098.05.0484.01.0
098574.04.09.01.0
107.08532.024.025.0
112138.07.06441.02.0
128473.022.025.068.0
13930.0761.06856.041.0
14423.05780.0156.02229.0
158161.0145.0220.062.0
16533.01658.02834.03563.0
17358.04829.02672.0729.0
181959.05557.0193.0879.0
19215.08030.059.0284.0
20647.06073.0820.01048.0
212135.252604.251694.252154.25
PFM
ACGT
010.3890.2810.2260.104
020.150.4130.1170.32
030.0180.0460.8920.044
040.1280.8320.0140.026
050.1830.0590.0370.721
060.7340.010.2390.016
070.040.0950.0020.863
080.9430.0010.0560.0
090.9980.00.0010.0
100.0010.9930.0030.003
110.2490.0010.750.0
120.9870.0030.0030.008
130.1080.0890.7980.005
140.0490.6730.0180.26
150.950.0170.0260.007
160.0620.1930.330.415
170.0420.5620.3110.085
180.2280.6470.0220.102
190.0250.9350.0070.033
200.0750.7070.0950.122
210.2490.3030.1970.251
PWM
ACGT
010.4420.117-0.101-0.874
02-0.5080.501-0.760.247
03-2.602-1.6961.271-1.729
04-0.6681.202-2.859-2.265
05-0.313-1.442-1.9041.059
061.077-3.148-0.045-2.715
07-1.817-0.967-4.7681.238
081.327-5.69-1.486-6.49
091.384-5.838-5.251-6.49
10-5.4471.379-4.405-4.367
11-0.004-5.4471.098-6.223
121.372-4.484-4.367-3.421
13-0.835-1.0351.16-3.906
14-1.620.99-2.6090.037
151.335-2.681-2.269-3.51
16-1.39-0.2580.2770.506
17-1.7860.810.219-1.078
18-0.0920.95-2.399-0.892
19-2.2921.318-3.558-2.016
20-1.1971.039-0.961-0.716
21-0.0050.193-0.2370.003
Standard thresholds
P-value Threshold
0.001 -1.62189
0.0005 0.04091
0.0001 3.52806