MotifZNF12.H12CORE.0.P.C
Gene (human)ZNF12
(GeneCards)
Gene synonyms (human)GIOT3, KOX3, ZNF325
Gene (mouse)Znf12
Gene synonyms (mouse)Zfp12
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length24
ConsensusdGCWGCdRWRASRRRhdvvYMhvv
GC content50.27%
Information content (bits; total / per base)15.047 / 0.627
Data sourcesChIP-Seq
Aligned words997

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (4) 0.881 0.886 0.865 0.871 0.88 0.886 7.899 8.078 172.194 227.268

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.775 0.781 0.637 0.657 0.563 0.589
best 0.91 0.906 0.72 0.738 0.604 0.638
Methyl HT-SELEX, 1 experiments median 0.91 0.906 0.72 0.738 0.604 0.638
best 0.91 0.906 0.72 0.738 0.604 0.638
Non-Methyl HT-SELEX, 1 experiments median 0.64 0.655 0.554 0.575 0.521 0.54
best 0.64 0.655 0.554 0.575 0.521 0.54
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF12-like {2.3.3.81} (TFClass)
TFClass IDTFClass: 2.3.3.81.1
HGNCHGNC:12902
MGIMGI:99157
EntrezGene (human)GeneID:7559
(SSTAR profile)
EntrezGene (mouse)GeneID:231866
(SSTAR profile)
UniProt ID (human)ZNF12_HUMAN
UniProt ID (mouse)ZNF12_MOUSE
UniProt AC (human)P17014
(TFClass)
UniProt AC (mouse)Q7TSI0
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
01238.093.0217.0449.0
0231.031.0911.024.0
0369.0837.057.034.0
04107.0100.069.0721.0
0552.020.0836.089.0
0666.0831.041.059.0
07393.075.0121.0408.0
08294.056.0601.046.0
09174.0135.072.0616.0
10708.029.0242.018.0
11899.027.060.011.0
1258.0727.0185.027.0
13762.040.0166.029.0
14787.051.0128.031.0
15609.0114.0244.030.0
16272.0358.0126.0241.0
17570.091.0183.0153.0
18385.0137.0344.0131.0
19176.0434.0250.0137.0
20140.0611.086.0160.0
21174.0635.076.0112.0
22128.0572.0100.0197.0
23384.0295.0169.0149.0
24456.0198.0248.095.0
PFM
ACGT
010.2390.0930.2180.45
020.0310.0310.9140.024
030.0690.840.0570.034
040.1070.10.0690.723
050.0520.020.8390.089
060.0660.8340.0410.059
070.3940.0750.1210.409
080.2950.0560.6030.046
090.1750.1350.0720.618
100.710.0290.2430.018
110.9020.0270.060.011
120.0580.7290.1860.027
130.7640.040.1660.029
140.7890.0510.1280.031
150.6110.1140.2450.03
160.2730.3590.1260.242
170.5720.0910.1840.153
180.3860.1370.3450.131
190.1770.4350.2510.137
200.140.6130.0860.16
210.1750.6370.0760.112
220.1280.5740.10.198
230.3850.2960.170.149
240.4570.1990.2490.095
PWM
ACGT
01-0.046-0.974-0.1380.586
02-2.037-2.0371.291-2.278
03-1.2671.207-1.452-1.949
04-0.837-0.903-1.2671.058
05-1.541-2.4471.205-1.018
06-1.311.199-1.771-1.419
070.453-1.185-0.7150.49
080.164-1.470.876-1.66
09-0.356-0.607-1.2250.901
101.04-2.1-0.029-2.543
111.278-2.168-1.403-2.982
12-1.4361.066-0.296-2.168
131.113-1.794-0.403-2.1
141.145-1.56-0.66-2.037
150.889-0.774-0.021-2.068
160.0870.36-0.675-0.033
170.823-0.996-0.306-0.484
180.432-0.5930.32-0.637
19-0.3450.5520.003-0.593
20-0.5710.893-1.051-0.439
21-0.3560.931-1.172-0.792
22-0.660.827-0.903-0.233
230.430.167-0.385-0.51
240.601-0.228-0.005-0.953
Standard thresholds
P-value Threshold
0.001 3.45401
0.0005 4.45556
0.0001 6.59006