ZNF10.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF10.H12INVIVO.0.P.C
Gene (human)	ZNF10 (GeneCards)
Gene synonyms (human)	KOX1
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	23
Consensus	RAYCCCTWCCTCACACCWTAYRY
GC content	50.5%
Information content (bits; total / per base)	31.361 / 1.364
Data sources	ChIP-Seq
Aligned words	902

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.982	0.987	0.982	0.985	0.983	0.988	17.177	17.229	474.869	484.201

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.118
HGNC	HGNC:12879
MGI
EntrezGene (human)	GeneID:7556 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF10_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P21506 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZNF10.H12INVIVO.0.P.C.pcm
PWM	ZNF10.H12INVIVO.0.P.C.pwm
PFM	ZNF10.H12INVIVO.0.P.C.pfm
Alignment	ZNF10.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZNF10.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZNF10.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZNF10.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZNF10.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZNF10.H12INVIVO.0.P.C_homer_format_0.001.txt ZNF10.H12INVIVO.0.P.C_homer_format_0.0005.txt ZNF10.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	209.0	27.0	632.0	34.0
02	795.0	47.0	31.0	29.0
03	22.0	497.0	19.0	364.0
04	1.0	869.0	6.0	26.0
05	5.0	877.0	2.0	18.0
06	32.0	735.0	4.0	131.0
07	31.0	15.0	11.0	845.0
08	633.0	43.0	57.0	169.0
09	7.0	866.0	0.0	29.0
10	0.0	902.0	0.0	0.0
11	1.0	6.0	0.0	895.0
12	0.0	851.0	2.0	49.0
13	897.0	0.0	3.0	2.0
14	13.0	862.0	1.0	26.0
15	843.0	7.0	28.0	24.0
16	11.0	823.0	25.0	43.0
17	3.0	862.0	1.0	36.0
18	722.0	55.0	32.0	93.0
19	29.0	108.0	11.0	754.0
20	799.0	22.0	33.0	48.0
21	37.0	254.0	32.0	579.0
22	721.0	47.0	83.0	51.0
23	74.0	629.0	59.0	140.0

PFM

	A	C	G	T
01	0.232	0.03	0.701	0.038
02	0.881	0.052	0.034	0.032
03	0.024	0.551	0.021	0.404
04	0.001	0.963	0.007	0.029
05	0.006	0.972	0.002	0.02
06	0.035	0.815	0.004	0.145
07	0.034	0.017	0.012	0.937
08	0.702	0.048	0.063	0.187
09	0.008	0.96	0.0	0.032
10	0.0	1.0	0.0	0.0
11	0.001	0.007	0.0	0.992
12	0.0	0.943	0.002	0.054
13	0.994	0.0	0.003	0.002
14	0.014	0.956	0.001	0.029
15	0.935	0.008	0.031	0.027
16	0.012	0.912	0.028	0.048
17	0.003	0.956	0.001	0.04
18	0.8	0.061	0.035	0.103
19	0.032	0.12	0.012	0.836
20	0.886	0.024	0.037	0.053
21	0.041	0.282	0.035	0.642
22	0.799	0.052	0.092	0.057
23	0.082	0.697	0.065	0.155

PWM

	A	C	G	T
01	-0.075	-2.069	1.026	-1.851
02	1.255	-1.54	-1.938	-2.002
03	-2.26	0.786	-2.396	0.476
04	-4.432	1.343	-3.384	-2.104
05	-3.524	1.353	-4.117	-2.445
06	-1.908	1.176	-3.685	-0.538
07	-1.938	-2.61	-2.884	1.316
08	1.027	-1.626	-1.353	-0.286
09	-3.262	1.34	-4.895	-2.002
10	-4.895	1.381	-4.895	-4.895
11	-4.432	-3.384	-4.895	1.373
12	-4.895	1.323	-4.117	-1.5
13	1.375	-4.895	-3.878	-4.117
14	-2.738	1.335	-4.432	-2.104
15	1.313	-3.262	-2.035	-2.179
16	-2.884	1.289	-2.141	-1.626
17	-3.878	1.335	-4.432	-1.796
18	1.159	-1.388	-1.908	-0.875
19	-2.002	-0.728	-2.884	1.202
20	1.26	-2.26	-1.879	-1.52
21	-1.77	0.118	-1.908	0.938
22	1.157	-1.54	-0.987	-1.461
23	-1.099	1.021	-1.32	-0.472

Standard thresholds

P-value	Threshold
0.001	-7.07189
0.0005	-5.20849
0.0001	-1.21749