ZN891.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN891.H12INVIVO.0.P.C
Gene (human)	ZNF891 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	15
Consensus	vRGGCTRGAWGhYdv
GC content	62.27%
Information content (bits; total / per base)	15.323 / 1.022
Data sources	ChIP-Seq
Aligned words	88

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.825	0.825	0.825	0.825	0.798	0.798	4.187	4.187	30.443	60.886

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF177-like {2.3.3.40} (TFClass)
TFClass ID	TFClass: 2.3.3.40.2
HGNC	HGNC:38709
MGI
EntrezGene (human)	GeneID:101060200 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN891_HUMAN
UniProt ID (mouse)
UniProt AC (human)	A8MT65 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN891.H12INVIVO.0.P.C.pcm
PWM	ZN891.H12INVIVO.0.P.C.pwm
PFM	ZN891.H12INVIVO.0.P.C.pfm
Alignment	ZN891.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN891.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN891.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN891.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN891.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN891.H12INVIVO.0.P.C_homer_format_0.001.txt ZN891.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN891.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	23.0	25.0	38.0	2.0
02	16.0	3.0	65.0	4.0
03	4.0	3.0	78.0	3.0
04	2.0	0.0	85.0	1.0
05	1.0	83.0	0.0	4.0
06	1.0	0.0	0.0	87.0
07	55.0	1.0	32.0	0.0
08	0.0	7.0	80.0	1.0
09	71.0	7.0	10.0	0.0
10	61.0	10.0	1.0	16.0
11	9.0	0.0	79.0	0.0
12	15.0	47.0	9.0	17.0
13	7.0	65.0	1.0	15.0
14	16.0	10.0	19.0	43.0
15	17.0	20.0	44.0	7.0

PFM

	A	C	G	T
01	0.261	0.284	0.432	0.023
02	0.182	0.034	0.739	0.045
03	0.045	0.034	0.886	0.034
04	0.023	0.0	0.966	0.011
05	0.011	0.943	0.0	0.045
06	0.011	0.0	0.0	0.989
07	0.625	0.011	0.364	0.0
08	0.0	0.08	0.909	0.011
09	0.807	0.08	0.114	0.0
10	0.693	0.114	0.011	0.182
11	0.102	0.0	0.898	0.0
12	0.17	0.534	0.102	0.193
13	0.08	0.739	0.011	0.17
14	0.182	0.114	0.216	0.489
15	0.193	0.227	0.5	0.08

PWM

	A	C	G	T
01	0.042	0.122	0.526	-2.003
02	-0.3	-1.725	1.051	-1.508
03	-1.508	-1.725	1.23	-1.725
04	-2.003	-3.028	1.315	-2.39
05	-2.39	1.292	-3.028	-1.508
06	-2.39	-3.028	-3.028	1.338
07	0.887	-2.39	0.359	-3.028
08	-3.028	-1.046	1.255	-2.39
09	1.138	-1.046	-0.732	-3.028
10	0.988	-0.732	-2.39	-0.3
11	-0.826	-3.028	1.243	-3.028
12	-0.361	0.733	-0.826	-0.244
13	-1.046	1.051	-2.39	-0.361
14	-0.3	-0.732	-0.139	0.646
15	-0.244	-0.09	0.669	-1.046

Standard thresholds

P-value	Threshold
0.001	3.66986
0.0005	4.69946
0.0001	6.85956