MotifZN880.H12INVIVO.0.P.C
Gene (human)ZNF880
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length23
ConsensusYhvYTGYRCTCTCCCYYhYCCMh
GC content59.77%
Information content (bits; total / per base)21.176 / 0.921
Data sourcesChIP-Seq
Aligned words119

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (2) 0.841 0.841 0.824 0.824 0.839 0.839 8.771 8.771 53.62 53.62
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.173
HGNCHGNC:37249
MGI
EntrezGene (human)GeneID:400713
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN880_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q6PDB4
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0117.026.08.068.0
0213.047.08.051.0
0336.028.049.06.0
0412.082.06.019.0
052.06.016.095.0
062.08.0106.03.0
079.091.03.016.0
0872.09.022.016.0
095.0108.01.05.0
104.08.00.0107.0
110.0103.02.014.0
126.09.03.0101.0
134.0112.01.02.0
144.0103.01.011.0
152.0110.00.07.0
1622.046.00.051.0
179.079.07.024.0
1815.029.09.066.0
198.095.07.09.0
201.0101.05.012.0
212.0108.03.06.0
2276.027.08.08.0
2367.022.014.016.0
PFM
ACGT
010.1430.2180.0670.571
020.1090.3950.0670.429
030.3030.2350.4120.05
040.1010.6890.050.16
050.0170.050.1340.798
060.0170.0670.8910.025
070.0760.7650.0250.134
080.6050.0760.1850.134
090.0420.9080.0080.042
100.0340.0670.00.899
110.00.8660.0170.118
120.050.0760.0250.849
130.0340.9410.0080.017
140.0340.8660.0080.092
150.0170.9240.00.059
160.1850.3870.00.429
170.0760.6640.0590.202
180.1260.2440.0760.555
190.0670.7980.0590.076
200.0080.8490.0420.101
210.0170.9080.0250.05
220.6390.2270.0670.067
230.5630.1850.1180.134
PWM
ACGT
01-0.531-0.129-1.2140.805
02-0.7790.443-1.2140.523
030.184-0.0580.484-1.459
04-0.8520.989-1.459-0.427
05-2.271-1.459-0.5881.134
06-2.271-1.2141.242-1.998
07-1.111.092-1.998-0.588
080.861-1.11-0.288-0.588
09-1.6081.261-2.646-1.608
10-1.785-1.214-3.2541.252
11-3.2541.214-2.271-0.711
12-1.459-1.11-1.9981.195
13-1.7851.297-2.646-2.271
14-1.7851.214-2.646-0.931
15-2.2711.279-3.254-1.329
16-0.2880.422-3.2540.523
17-1.110.952-1.329-0.206
18-0.648-0.025-1.110.775
19-1.2141.134-1.329-1.11
20-2.6461.195-1.608-0.852
21-2.2711.261-1.998-1.459
220.914-0.093-1.214-1.214
230.79-0.288-0.711-0.588
Standard thresholds
P-value Threshold
0.001 1.72741
0.0005 2.91991
0.0001 5.47051