ZN880.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN880.H12INVITRO.0.P.D
Gene (human)	ZNF880 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	YhvYTGYRCTCTCCCYYhYCCMh
GC content	59.77%
Information content (bits; total / per base)	21.176 / 0.921
Data sources	ChIP-Seq
Aligned words	119

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.841	0.841	0.824	0.824	0.839	0.839	8.771	8.771	53.62	53.62

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.173
HGNC	HGNC:37249
MGI
EntrezGene (human)	GeneID:400713 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN880_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6PDB4 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN880.H12INVITRO.0.P.D.pcm
PWM	ZN880.H12INVITRO.0.P.D.pwm
PFM	ZN880.H12INVITRO.0.P.D.pfm
Alignment	ZN880.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN880.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN880.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN880.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN880.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN880.H12INVITRO.0.P.D_homer_format_0.001.txt ZN880.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN880.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	17.0	26.0	8.0	68.0
02	13.0	47.0	8.0	51.0
03	36.0	28.0	49.0	6.0
04	12.0	82.0	6.0	19.0
05	2.0	6.0	16.0	95.0
06	2.0	8.0	106.0	3.0
07	9.0	91.0	3.0	16.0
08	72.0	9.0	22.0	16.0
09	5.0	108.0	1.0	5.0
10	4.0	8.0	0.0	107.0
11	0.0	103.0	2.0	14.0
12	6.0	9.0	3.0	101.0
13	4.0	112.0	1.0	2.0
14	4.0	103.0	1.0	11.0
15	2.0	110.0	0.0	7.0
16	22.0	46.0	0.0	51.0
17	9.0	79.0	7.0	24.0
18	15.0	29.0	9.0	66.0
19	8.0	95.0	7.0	9.0
20	1.0	101.0	5.0	12.0
21	2.0	108.0	3.0	6.0
22	76.0	27.0	8.0	8.0
23	67.0	22.0	14.0	16.0

PFM

	A	C	G	T
01	0.143	0.218	0.067	0.571
02	0.109	0.395	0.067	0.429
03	0.303	0.235	0.412	0.05
04	0.101	0.689	0.05	0.16
05	0.017	0.05	0.134	0.798
06	0.017	0.067	0.891	0.025
07	0.076	0.765	0.025	0.134
08	0.605	0.076	0.185	0.134
09	0.042	0.908	0.008	0.042
10	0.034	0.067	0.0	0.899
11	0.0	0.866	0.017	0.118
12	0.05	0.076	0.025	0.849
13	0.034	0.941	0.008	0.017
14	0.034	0.866	0.008	0.092
15	0.017	0.924	0.0	0.059
16	0.185	0.387	0.0	0.429
17	0.076	0.664	0.059	0.202
18	0.126	0.244	0.076	0.555
19	0.067	0.798	0.059	0.076
20	0.008	0.849	0.042	0.101
21	0.017	0.908	0.025	0.05
22	0.639	0.227	0.067	0.067
23	0.563	0.185	0.118	0.134

PWM

	A	C	G	T
01	-0.531	-0.129	-1.214	0.805
02	-0.779	0.443	-1.214	0.523
03	0.184	-0.058	0.484	-1.459
04	-0.852	0.989	-1.459	-0.427
05	-2.271	-1.459	-0.588	1.134
06	-2.271	-1.214	1.242	-1.998
07	-1.11	1.092	-1.998	-0.588
08	0.861	-1.11	-0.288	-0.588
09	-1.608	1.261	-2.646	-1.608
10	-1.785	-1.214	-3.254	1.252
11	-3.254	1.214	-2.271	-0.711
12	-1.459	-1.11	-1.998	1.195
13	-1.785	1.297	-2.646	-2.271
14	-1.785	1.214	-2.646	-0.931
15	-2.271	1.279	-3.254	-1.329
16	-0.288	0.422	-3.254	0.523
17	-1.11	0.952	-1.329	-0.206
18	-0.648	-0.025	-1.11	0.775
19	-1.214	1.134	-1.329	-1.11
20	-2.646	1.195	-1.608	-0.852
21	-2.271	1.261	-1.998	-1.459
22	0.914	-0.093	-1.214	-1.214
23	0.79	-0.288	-0.711	-0.588

Standard thresholds

P-value	Threshold
0.001	1.72741
0.0005	2.91991
0.0001	5.47051