MotifZN879.H12INVIVO.0.P.C
Gene (human)ZNF879
(GeneCards)
Gene synonyms (human)
Gene (mouse)Znf879
Gene synonyms (mouse)Zfp879
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length31
ConsensushdYKdRGdvCAhdTWYRTTYWndWKTRYTWW
GC content30.95%
Information content (bits; total / per base)22.15 / 0.715
Data sourcesChIP-Seq
Aligned words995

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (4) 0.856 0.87 0.82 0.832 0.92 0.926 10.647 10.844 294.038 301.237
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.157
HGNCHGNC:37273
MGIMGI:3053099
EntrezGene (human)GeneID:345462
(SSTAR profile)
EntrezGene (mouse)GeneID:214779
(SSTAR profile)
UniProt ID (human)ZN879_HUMAN
UniProt ID (mouse)ZN879_MOUSE
UniProt AC (human)B4DU55
(TFClass)
UniProt AC (mouse)Q8BI99
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01142.0147.0139.0567.0
02312.088.0464.0131.0
0390.0105.089.0711.0
0446.064.0121.0764.0
05230.054.0217.0494.0
06218.022.0649.0106.0
0752.034.0800.0109.0
08130.083.0213.0569.0
09132.0237.0559.067.0
1019.0900.011.065.0
11840.048.038.069.0
1281.081.049.0784.0
13462.099.0177.0257.0
1462.075.039.0819.0
15770.033.075.0117.0
1678.0161.0138.0618.0
17382.056.0492.065.0
1823.068.037.0867.0
1950.040.079.0826.0
2064.0336.061.0534.0
21716.067.050.0162.0
22265.0223.0165.0342.0
23298.035.0162.0500.0
24565.033.0132.0265.0
2579.090.0115.0711.0
2614.09.020.0952.0
27213.024.0565.0193.0
2840.0193.0125.0637.0
2983.013.039.0860.0
30628.025.0164.0178.0
3196.073.046.0780.0
PFM
ACGT
010.1430.1480.140.57
020.3140.0880.4660.132
030.090.1060.0890.715
040.0460.0640.1220.768
050.2310.0540.2180.496
060.2190.0220.6520.107
070.0520.0340.8040.11
080.1310.0830.2140.572
090.1330.2380.5620.067
100.0190.9050.0110.065
110.8440.0480.0380.069
120.0810.0810.0490.788
130.4640.0990.1780.258
140.0620.0750.0390.823
150.7740.0330.0750.118
160.0780.1620.1390.621
170.3840.0560.4940.065
180.0230.0680.0370.871
190.050.040.0790.83
200.0640.3380.0610.537
210.720.0670.050.163
220.2660.2240.1660.344
230.2990.0350.1630.503
240.5680.0330.1330.266
250.0790.090.1160.715
260.0140.0090.020.957
270.2140.0240.5680.194
280.040.1940.1260.64
290.0830.0130.0390.864
300.6310.0250.1650.179
310.0960.0730.0460.784
PWM
ACGT
01-0.555-0.521-0.5770.82
020.225-1.0270.62-0.635
03-1.005-0.853-1.0161.046
04-1.658-1.338-0.7131.117
05-0.078-1.503-0.1360.683
06-0.131-2.3570.955-0.844
07-1.539-1.9471.163-0.816
08-0.643-1.084-0.1540.824
09-0.628-0.0480.806-1.293
10-2.4921.281-2.98-1.323
111.212-1.617-1.841-1.265
12-1.108-1.108-1.5971.143
130.616-0.911-0.3380.032
14-1.369-1.183-1.8171.187
151.125-1.976-1.183-0.747
16-1.145-0.431-0.5840.906
170.427-1.4680.679-1.323
18-2.316-1.279-1.8671.244
19-1.577-1.792-1.1321.195
20-1.3380.299-1.3850.76
211.053-1.293-1.577-0.425
220.063-0.108-0.4070.316
230.18-1.92-0.4250.695
240.817-1.976-0.6280.063
25-1.132-1.005-0.7641.046
26-2.768-3.151-2.4451.337
27-0.154-2.2760.817-0.252
28-1.792-0.252-0.6810.936
29-1.084-2.834-1.8171.236
300.922-2.238-0.413-0.332
31-0.941-1.21-1.6581.138
Standard thresholds
P-value Threshold
0.001 0.94266
0.0005 2.17861
0.0001 4.83251