ZN879.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN879.H12INVITRO.0.P.D
Gene (human)	ZNF879 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf879
Gene synonyms (mouse)	Zfp879
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	31
Consensus	hdYKdRGdvCAhdTWYRTTYWndWKTRYTWW
GC content	30.95%
Information content (bits; total / per base)	22.15 / 0.715
Data sources	ChIP-Seq
Aligned words	995

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.856	0.87	0.82	0.832	0.92	0.926	10.647	10.844	294.038	301.237

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.157
HGNC	HGNC:37273
MGI	MGI:3053099
EntrezGene (human)	GeneID:345462 (SSTAR profile)
EntrezGene (mouse)	GeneID:214779 (SSTAR profile)
UniProt ID (human)	ZN879_HUMAN
UniProt ID (mouse)	ZN879_MOUSE
UniProt AC (human)	B4DU55 (TFClass)
UniProt AC (mouse)	Q8BI99 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN879.H12INVITRO.0.P.D.pcm
PWM	ZN879.H12INVITRO.0.P.D.pwm
PFM	ZN879.H12INVITRO.0.P.D.pfm
Alignment	ZN879.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN879.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN879.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN879.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN879.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN879.H12INVITRO.0.P.D_homer_format_0.001.txt ZN879.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN879.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	142.0	147.0	139.0	567.0
02	312.0	88.0	464.0	131.0
03	90.0	105.0	89.0	711.0
04	46.0	64.0	121.0	764.0
05	230.0	54.0	217.0	494.0
06	218.0	22.0	649.0	106.0
07	52.0	34.0	800.0	109.0
08	130.0	83.0	213.0	569.0
09	132.0	237.0	559.0	67.0
10	19.0	900.0	11.0	65.0
11	840.0	48.0	38.0	69.0
12	81.0	81.0	49.0	784.0
13	462.0	99.0	177.0	257.0
14	62.0	75.0	39.0	819.0
15	770.0	33.0	75.0	117.0
16	78.0	161.0	138.0	618.0
17	382.0	56.0	492.0	65.0
18	23.0	68.0	37.0	867.0
19	50.0	40.0	79.0	826.0
20	64.0	336.0	61.0	534.0
21	716.0	67.0	50.0	162.0
22	265.0	223.0	165.0	342.0
23	298.0	35.0	162.0	500.0
24	565.0	33.0	132.0	265.0
25	79.0	90.0	115.0	711.0
26	14.0	9.0	20.0	952.0
27	213.0	24.0	565.0	193.0
28	40.0	193.0	125.0	637.0
29	83.0	13.0	39.0	860.0
30	628.0	25.0	164.0	178.0
31	96.0	73.0	46.0	780.0

PFM

	A	C	G	T
01	0.143	0.148	0.14	0.57
02	0.314	0.088	0.466	0.132
03	0.09	0.106	0.089	0.715
04	0.046	0.064	0.122	0.768
05	0.231	0.054	0.218	0.496
06	0.219	0.022	0.652	0.107
07	0.052	0.034	0.804	0.11
08	0.131	0.083	0.214	0.572
09	0.133	0.238	0.562	0.067
10	0.019	0.905	0.011	0.065
11	0.844	0.048	0.038	0.069
12	0.081	0.081	0.049	0.788
13	0.464	0.099	0.178	0.258
14	0.062	0.075	0.039	0.823
15	0.774	0.033	0.075	0.118
16	0.078	0.162	0.139	0.621
17	0.384	0.056	0.494	0.065
18	0.023	0.068	0.037	0.871
19	0.05	0.04	0.079	0.83
20	0.064	0.338	0.061	0.537
21	0.72	0.067	0.05	0.163
22	0.266	0.224	0.166	0.344
23	0.299	0.035	0.163	0.503
24	0.568	0.033	0.133	0.266
25	0.079	0.09	0.116	0.715
26	0.014	0.009	0.02	0.957
27	0.214	0.024	0.568	0.194
28	0.04	0.194	0.126	0.64
29	0.083	0.013	0.039	0.864
30	0.631	0.025	0.165	0.179
31	0.096	0.073	0.046	0.784

PWM

	A	C	G	T
01	-0.555	-0.521	-0.577	0.82
02	0.225	-1.027	0.62	-0.635
03	-1.005	-0.853	-1.016	1.046
04	-1.658	-1.338	-0.713	1.117
05	-0.078	-1.503	-0.136	0.683
06	-0.131	-2.357	0.955	-0.844
07	-1.539	-1.947	1.163	-0.816
08	-0.643	-1.084	-0.154	0.824
09	-0.628	-0.048	0.806	-1.293
10	-2.492	1.281	-2.98	-1.323
11	1.212	-1.617	-1.841	-1.265
12	-1.108	-1.108	-1.597	1.143
13	0.616	-0.911	-0.338	0.032
14	-1.369	-1.183	-1.817	1.187
15	1.125	-1.976	-1.183	-0.747
16	-1.145	-0.431	-0.584	0.906
17	0.427	-1.468	0.679	-1.323
18	-2.316	-1.279	-1.867	1.244
19	-1.577	-1.792	-1.132	1.195
20	-1.338	0.299	-1.385	0.76
21	1.053	-1.293	-1.577	-0.425
22	0.063	-0.108	-0.407	0.316
23	0.18	-1.92	-0.425	0.695
24	0.817	-1.976	-0.628	0.063
25	-1.132	-1.005	-0.764	1.046
26	-2.768	-3.151	-2.445	1.337
27	-0.154	-2.276	0.817	-0.252
28	-1.792	-0.252	-0.681	0.936
29	-1.084	-2.834	-1.817	1.236
30	0.922	-2.238	-0.413	-0.332
31	-0.941	-1.21	-1.658	1.138

Standard thresholds

P-value	Threshold
0.001	0.94266
0.0005	2.17861
0.0001	4.83251