ZN875.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN875.H12INVIVO.0.P.C
Gene (human)	ZNF875 (GeneCards)
Gene synonyms (human)	HKR1
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	25
Consensus	GAKMbvMKGYACYRRGGAGGAYRhR
GC content	49.96%
Information content (bits; total / per base)	24.428 / 0.977
Data sources	ChIP-Seq
Aligned words	151

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.863	0.863	0.842	0.842	0.905	0.905	9.034	9.034	85.854	85.854

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF343-like {2.3.3.61} (TFClass)
TFClass ID	TFClass: 2.3.3.61.2
HGNC	HGNC:4928
MGI
EntrezGene (human)	GeneID:284459 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN875_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P10072 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN875.H12INVIVO.0.P.C.pcm
PWM	ZN875.H12INVIVO.0.P.C.pwm
PFM	ZN875.H12INVIVO.0.P.C.pfm
Alignment	ZN875.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN875.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN875.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN875.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN875.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN875.H12INVIVO.0.P.C_homer_format_0.001.txt ZN875.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN875.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	13.0	11.0	123.0	4.0
02	122.0	15.0	7.0	7.0
03	8.0	11.0	13.0	119.0
04	100.0	23.0	17.0	11.0
05	10.0	52.0	18.0	71.0
06	34.0	40.0	65.0	12.0
07	90.0	26.0	22.0	13.0
08	5.0	7.0	26.0	113.0
09	5.0	3.0	143.0	0.0
10	12.0	102.0	18.0	19.0
11	145.0	2.0	4.0	0.0
12	9.0	130.0	4.0	8.0
13	6.0	31.0	8.0	106.0
14	61.0	10.0	76.0	4.0
15	78.0	0.0	57.0	16.0
16	3.0	1.0	145.0	2.0
17	74.0	0.0	77.0	0.0
18	148.0	0.0	3.0	0.0
19	2.0	0.0	148.0	1.0
20	15.0	0.0	134.0	2.0
21	123.0	17.0	9.0	2.0
22	7.0	112.0	8.0	24.0
23	117.0	8.0	20.0	6.0
24	22.0	90.0	15.0	24.0
25	110.0	4.0	31.0	6.0

PFM

	A	C	G	T
01	0.086	0.073	0.815	0.026
02	0.808	0.099	0.046	0.046
03	0.053	0.073	0.086	0.788
04	0.662	0.152	0.113	0.073
05	0.066	0.344	0.119	0.47
06	0.225	0.265	0.43	0.079
07	0.596	0.172	0.146	0.086
08	0.033	0.046	0.172	0.748
09	0.033	0.02	0.947	0.0
10	0.079	0.675	0.119	0.126
11	0.96	0.013	0.026	0.0
12	0.06	0.861	0.026	0.053
13	0.04	0.205	0.053	0.702
14	0.404	0.066	0.503	0.026
15	0.517	0.0	0.377	0.106
16	0.02	0.007	0.96	0.013
17	0.49	0.0	0.51	0.0
18	0.98	0.0	0.02	0.0
19	0.013	0.0	0.98	0.007
20	0.099	0.0	0.887	0.013
21	0.815	0.113	0.06	0.013
22	0.046	0.742	0.053	0.159
23	0.775	0.053	0.132	0.04
24	0.146	0.596	0.099	0.159
25	0.728	0.026	0.205	0.04

PWM

	A	C	G	T
01	-1.007	-1.158	1.159	-2.005
02	1.151	-0.875	-1.553	-1.553
03	-1.439	-1.158	-1.007	1.126
04	0.954	-0.475	-0.759	-1.158
05	-1.243	0.311	-0.706	0.617
06	-0.101	0.056	0.53	-1.079
07	0.85	-0.358	-0.517	-1.007
08	-1.83	-1.553	-0.358	1.075
09	-1.83	-2.216	1.308	-3.437
10	-1.079	0.974	-0.706	-0.655
11	1.322	-2.484	-2.005	-3.437
12	-1.336	1.213	-2.005	-1.439
13	-1.682	-0.19	-1.439	1.012
14	0.468	-1.243	0.683	-2.005
15	0.709	-3.437	0.401	-0.816
16	-2.216	-2.851	1.322	-2.484
17	0.657	-3.437	0.696	-3.437
18	1.342	-3.437	-2.216	-3.437
19	-2.484	-3.437	1.342	-2.851
20	-0.875	-3.437	1.243	-2.484
21	1.159	-0.759	-1.336	-2.484
22	-1.553	1.066	-1.439	-0.435
23	1.109	-1.439	-0.607	-1.682
24	-0.517	0.85	-0.875	-0.435
25	1.048	-2.005	-0.19	-1.682

Standard thresholds

P-value	Threshold
0.001	-0.02709
0.0005	1.33266
0.0001	4.23821