MotifZN875.H12INVIVO.0.P.C
Gene (human)ZNF875
(GeneCards)
Gene synonyms (human)HKR1
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length25
ConsensusGAKMbvMKGYACYRRGGAGGAYRhR
GC content49.96%
Information content (bits; total / per base)24.428 / 0.977
Data sourcesChIP-Seq
Aligned words151

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (2) 0.863 0.863 0.842 0.842 0.905 0.905 9.034 9.034 85.854 85.854
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF343-like {2.3.3.61} (TFClass)
TFClass IDTFClass: 2.3.3.61.2
HGNCHGNC:4928
MGI
EntrezGene (human)GeneID:284459
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN875_HUMAN
UniProt ID (mouse)
UniProt AC (human)P10072
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0113.011.0123.04.0
02122.015.07.07.0
038.011.013.0119.0
04100.023.017.011.0
0510.052.018.071.0
0634.040.065.012.0
0790.026.022.013.0
085.07.026.0113.0
095.03.0143.00.0
1012.0102.018.019.0
11145.02.04.00.0
129.0130.04.08.0
136.031.08.0106.0
1461.010.076.04.0
1578.00.057.016.0
163.01.0145.02.0
1774.00.077.00.0
18148.00.03.00.0
192.00.0148.01.0
2015.00.0134.02.0
21123.017.09.02.0
227.0112.08.024.0
23117.08.020.06.0
2422.090.015.024.0
25110.04.031.06.0
PFM
ACGT
010.0860.0730.8150.026
020.8080.0990.0460.046
030.0530.0730.0860.788
040.6620.1520.1130.073
050.0660.3440.1190.47
060.2250.2650.430.079
070.5960.1720.1460.086
080.0330.0460.1720.748
090.0330.020.9470.0
100.0790.6750.1190.126
110.960.0130.0260.0
120.060.8610.0260.053
130.040.2050.0530.702
140.4040.0660.5030.026
150.5170.00.3770.106
160.020.0070.960.013
170.490.00.510.0
180.980.00.020.0
190.0130.00.980.007
200.0990.00.8870.013
210.8150.1130.060.013
220.0460.7420.0530.159
230.7750.0530.1320.04
240.1460.5960.0990.159
250.7280.0260.2050.04
PWM
ACGT
01-1.007-1.1581.159-2.005
021.151-0.875-1.553-1.553
03-1.439-1.158-1.0071.126
040.954-0.475-0.759-1.158
05-1.2430.311-0.7060.617
06-0.1010.0560.53-1.079
070.85-0.358-0.517-1.007
08-1.83-1.553-0.3581.075
09-1.83-2.2161.308-3.437
10-1.0790.974-0.706-0.655
111.322-2.484-2.005-3.437
12-1.3361.213-2.005-1.439
13-1.682-0.19-1.4391.012
140.468-1.2430.683-2.005
150.709-3.4370.401-0.816
16-2.216-2.8511.322-2.484
170.657-3.4370.696-3.437
181.342-3.437-2.216-3.437
19-2.484-3.4371.342-2.851
20-0.875-3.4371.243-2.484
211.159-0.759-1.336-2.484
22-1.5531.066-1.439-0.435
231.109-1.439-0.607-1.682
24-0.5170.85-0.875-0.435
251.048-2.005-0.19-1.682
Standard thresholds
P-value Threshold
0.001 -0.02709
0.0005 1.33266
0.0001 4.23821