ZN860.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN860.H12RSNP.0.P.D
Gene (human)	ZNF860 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	17
Consensus	vbnhdGCTCCCWRYbbb
GC content	63.24%
Information content (bits; total / per base)	14.133 / 0.831
Data sources	ChIP-Seq
Aligned words	220

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.891	0.927	0.845	0.88	0.902	0.936	4.431	4.679	57.018	59.638

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF813-like {2.3.3.72} (TFClass)
TFClass ID	TFClass: 2.3.3.72.2
HGNC	HGNC:34513
MGI
EntrezGene (human)	GeneID:344787 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN860_HUMAN
UniProt ID (mouse)
UniProt AC (human)	A6NHJ4 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN860.H12RSNP.0.P.D.pcm
PWM	ZN860.H12RSNP.0.P.D.pwm
PFM	ZN860.H12RSNP.0.P.D.pfm
Alignment	ZN860.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN860.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN860.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN860.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN860.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN860.H12RSNP.0.P.D_homer_format_0.001.txt ZN860.H12RSNP.0.P.D_homer_format_0.0005.txt ZN860.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	27.0	115.0	55.0	23.0
02	14.0	78.0	49.0	79.0
03	27.0	58.0	62.0	73.0
04	33.0	87.0	27.0	73.0
05	31.0	30.0	34.0	125.0
06	12.0	13.0	184.0	11.0
07	2.0	215.0	3.0	0.0
08	0.0	0.0	0.0	220.0
09	2.0	216.0	1.0	1.0
10	3.0	211.0	3.0	3.0
11	0.0	215.0	2.0	3.0
12	49.0	4.0	11.0	156.0
13	28.0	23.0	159.0	10.0
14	17.0	145.0	25.0	33.0
15	20.0	68.0	21.0	111.0
16	26.0	89.0	38.0	67.0
17	25.0	89.0	35.0	71.0

PFM

	A	C	G	T
01	0.123	0.523	0.25	0.105
02	0.064	0.355	0.223	0.359
03	0.123	0.264	0.282	0.332
04	0.15	0.395	0.123	0.332
05	0.141	0.136	0.155	0.568
06	0.055	0.059	0.836	0.05
07	0.009	0.977	0.014	0.0
08	0.0	0.0	0.0	1.0
09	0.009	0.982	0.005	0.005
10	0.014	0.959	0.014	0.014
11	0.0	0.977	0.009	0.014
12	0.223	0.018	0.05	0.709
13	0.127	0.105	0.723	0.045
14	0.077	0.659	0.114	0.15
15	0.091	0.309	0.095	0.505
16	0.118	0.405	0.173	0.305
17	0.114	0.405	0.159	0.323

PWM

	A	C	G	T
01	-0.687	0.725	0.0	-0.839
02	-1.301	0.342	-0.113	0.355
03	-0.687	0.052	0.117	0.277
04	-0.495	0.45	-0.687	0.277
05	-0.555	-0.586	-0.466	0.807
06	-1.44	-1.368	1.191	-1.518
07	-2.823	1.345	-2.562	-3.733
08	-3.733	-3.733	-3.733	1.368
09	-2.823	1.35	-3.178	-3.178
10	-2.562	1.327	-2.562	-2.562
11	-3.733	1.345	-2.823	-2.562
12	-0.113	-2.355	-1.518	1.027
13	-0.652	-0.839	1.046	-1.602
14	-1.122	0.954	-0.76	-0.495
15	-0.971	0.208	-0.925	0.69
16	-0.723	0.472	-0.359	0.193
17	-0.76	0.472	-0.438	0.25

Standard thresholds

P-value	Threshold
0.001	3.63201
0.0005	4.70536
0.0001	6.93651