MotifZN860.H12INVIVO.0.P.C
Gene (human)ZNF860
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length17
ConsensusvbnhdGCTCCCWRYbbb
GC content63.24%
Information content (bits; total / per base)14.133 / 0.831
Data sourcesChIP-Seq
Aligned words220

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (4) 0.891 0.927 0.845 0.88 0.902 0.936 4.431 4.679 57.018 59.638
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF813-like {2.3.3.72} (TFClass)
TFClass IDTFClass: 2.3.3.72.2
HGNCHGNC:34513
MGI
EntrezGene (human)GeneID:344787
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN860_HUMAN
UniProt ID (mouse)
UniProt AC (human)A6NHJ4
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0127.0115.055.023.0
0214.078.049.079.0
0327.058.062.073.0
0433.087.027.073.0
0531.030.034.0125.0
0612.013.0184.011.0
072.0215.03.00.0
080.00.00.0220.0
092.0216.01.01.0
103.0211.03.03.0
110.0215.02.03.0
1249.04.011.0156.0
1328.023.0159.010.0
1417.0145.025.033.0
1520.068.021.0111.0
1626.089.038.067.0
1725.089.035.071.0
PFM
ACGT
010.1230.5230.250.105
020.0640.3550.2230.359
030.1230.2640.2820.332
040.150.3950.1230.332
050.1410.1360.1550.568
060.0550.0590.8360.05
070.0090.9770.0140.0
080.00.00.01.0
090.0090.9820.0050.005
100.0140.9590.0140.014
110.00.9770.0090.014
120.2230.0180.050.709
130.1270.1050.7230.045
140.0770.6590.1140.15
150.0910.3090.0950.505
160.1180.4050.1730.305
170.1140.4050.1590.323
PWM
ACGT
01-0.6870.7250.0-0.839
02-1.3010.342-0.1130.355
03-0.6870.0520.1170.277
04-0.4950.45-0.6870.277
05-0.555-0.586-0.4660.807
06-1.44-1.3681.191-1.518
07-2.8231.345-2.562-3.733
08-3.733-3.733-3.7331.368
09-2.8231.35-3.178-3.178
10-2.5621.327-2.562-2.562
11-3.7331.345-2.823-2.562
12-0.113-2.355-1.5181.027
13-0.652-0.8391.046-1.602
14-1.1220.954-0.76-0.495
15-0.9710.208-0.9250.69
16-0.7230.472-0.3590.193
17-0.760.472-0.4380.25
Standard thresholds
P-value Threshold
0.001 3.63201
0.0005 4.70536
0.0001 6.93651