ZN823.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN823.H12INVITRO.0.P.D
Gene (human)	ZNF823 (GeneCards)
Gene synonyms (human)	ZFP36
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	RMvRRvRRdRdKGMRRnAGAGAA
GC content	47.78%
Information content (bits; total / per base)	20.011 / 0.87
Data sources	ChIP-Seq
Aligned words	932

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.879	0.901	0.804	0.837	0.887	0.901	6.94	7.129	227.581	259.268

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF442-like {2.3.3.74} (TFClass)
TFClass ID	TFClass: 2.3.3.74.2
HGNC	HGNC:30936
MGI
EntrezGene (human)	GeneID:55552 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN823_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P16415 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN823.H12INVITRO.0.P.D.pcm
PWM	ZN823.H12INVITRO.0.P.D.pwm
PFM	ZN823.H12INVITRO.0.P.D.pfm
Alignment	ZN823.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN823.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN823.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN823.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN823.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN823.H12INVITRO.0.P.D_homer_format_0.001.txt ZN823.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN823.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	270.0	25.0	610.0	27.0
02	676.0	145.0	87.0	24.0
03	212.0	388.0	300.0	32.0
04	677.0	24.0	213.0	18.0
05	202.0	146.0	552.0	32.0
06	374.0	117.0	370.0	71.0
07	202.0	17.0	681.0	32.0
08	263.0	12.0	628.0	29.0
09	284.0	49.0	431.0	168.0
10	576.0	20.0	206.0	130.0
11	234.0	38.0	184.0	476.0
12	151.0	10.0	295.0	476.0
13	51.0	19.0	841.0	21.0
14	355.0	495.0	43.0	39.0
15	592.0	10.0	317.0	13.0
16	516.0	11.0	373.0	32.0
17	180.0	242.0	224.0	286.0
18	776.0	1.0	128.0	27.0
19	31.0	8.0	875.0	18.0
20	905.0	8.0	14.0	5.0
21	26.0	1.0	902.0	3.0
22	898.0	10.0	14.0	10.0
23	768.0	18.0	141.0	5.0

PFM

	A	C	G	T
01	0.29	0.027	0.655	0.029
02	0.725	0.156	0.093	0.026
03	0.227	0.416	0.322	0.034
04	0.726	0.026	0.229	0.019
05	0.217	0.157	0.592	0.034
06	0.401	0.126	0.397	0.076
07	0.217	0.018	0.731	0.034
08	0.282	0.013	0.674	0.031
09	0.305	0.053	0.462	0.18
10	0.618	0.021	0.221	0.139
11	0.251	0.041	0.197	0.511
12	0.162	0.011	0.317	0.511
13	0.055	0.02	0.902	0.023
14	0.381	0.531	0.046	0.042
15	0.635	0.011	0.34	0.014
16	0.554	0.012	0.4	0.034
17	0.193	0.26	0.24	0.307
18	0.833	0.001	0.137	0.029
19	0.033	0.009	0.939	0.019
20	0.971	0.009	0.015	0.005
21	0.028	0.001	0.968	0.003
22	0.964	0.011	0.015	0.011
23	0.824	0.019	0.151	0.005

PWM

	A	C	G	T
01	0.146	-2.173	0.958	-2.101
02	1.06	-0.47	-0.973	-2.211
03	-0.094	0.507	0.251	-1.941
04	1.062	-2.211	-0.089	-2.477
05	-0.142	-0.463	0.858	-1.941
06	0.47	-0.682	0.46	-1.172
07	-0.142	-2.529	1.068	-1.941
08	0.12	-2.84	0.987	-2.034
09	0.197	-1.532	0.612	-0.324
10	0.901	-2.381	-0.122	-0.578
11	0.004	-1.777	-0.234	0.711
12	-0.43	-2.998	0.234	0.711
13	-1.494	-2.428	1.278	-2.336
14	0.419	0.75	-1.658	-1.752
15	0.928	-2.998	0.306	-2.77
16	0.791	-2.916	0.468	-1.941
17	-0.256	0.038	-0.039	0.204
18	1.198	-4.462	-0.593	-2.101
19	-1.971	-3.185	1.318	-2.477
20	1.351	-3.185	-2.704	-3.555
21	-2.137	-4.462	1.348	-3.909
22	1.344	-2.998	-2.704	-2.998
23	1.188	-2.477	-0.498	-3.555

Standard thresholds

P-value	Threshold
0.001	0.71151
0.0005	2.07586
0.0001	4.96506