ZN821.H12INVIVO.0.SM.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN821.H12INVIVO.0.SM.D
Gene (human)	ZN821 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Zn821
Gene synonyms (mouse)	Zfp821
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	17
Consensus	hYGTCTGTCTGTCYRbn
GC content	54.64%
Information content (bits; total / per base)	20.219 / 1.189
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	1991

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.999	0.999	0.997	0.995	0.965	0.962
Overall, 2 experiments	best	0.999	0.999	0.997	0.996	0.97	0.966
Methyl HT-SELEX, 1 experiments	median	0.999	0.999	0.997	0.996	0.959	0.957
Methyl HT-SELEX, 1 experiments	best	0.999	0.999	0.997	0.996	0.959	0.957
Non-Methyl HT-SELEX, 1 experiments	median	0.999	0.999	0.996	0.995	0.97	0.966
Non-Methyl HT-SELEX, 1 experiments	best	0.999	0.999	0.996	0.995	0.97	0.966

TF superclass	Yet undefined DNA-binding domains {0} (TFClass)
TF class	Uncharacterized {0.0} (TFClass)
TF family	Unannotated {0.0.9} (TFClass)
TF subfamily	{0.0.9.0} (TFClass)
TFClass ID	TFClass: 0.0.9.0.1
HGNC	HGNC:28043
MGI	MGI:1923121
EntrezGene (human)	GeneID:55565 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN821_HUMAN
UniProt ID (mouse)	ZN821_MOUSE
UniProt AC (human)	O75541 (TFClass)
UniProt AC (mouse)	Q6PD05 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	ZN821.H12INVIVO.0.SM.D.pcm
PWM	ZN821.H12INVIVO.0.SM.D.pwm
PFM	ZN821.H12INVIVO.0.SM.D.pfm
Alignment	ZN821.H12INVIVO.0.SM.D.words.tsv
Threshold to P-value map	ZN821.H12INVIVO.0.SM.D.thr
Motif in other formats
JASPAR format	ZN821.H12INVIVO.0.SM.D_jaspar_format.txt
MEME format	ZN821.H12INVIVO.0.SM.D_meme_format.meme
Transfac format	ZN821.H12INVIVO.0.SM.D_transfac_format.txt
Homer format	ZN821.H12INVIVO.0.SM.D_homer_format_0.001.txt ZN821.H12INVIVO.0.SM.D_homer_format_0.0005.txt ZN821.H12INVIVO.0.SM.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	473.25	836.25	305.25	376.25
02	188.0	545.0	144.0	1114.0
03	151.0	36.0	1691.0	113.0
04	21.0	25.0	102.0	1843.0
05	72.0	1835.0	7.0	77.0
06	32.0	433.0	26.0	1500.0
07	42.0	1.0	1929.0	19.0
08	3.0	3.0	1.0	1984.0
09	12.0	1956.0	0.0	23.0
10	10.0	135.0	9.0	1837.0
11	5.0	0.0	1979.0	7.0
12	0.0	2.0	4.0	1985.0
13	14.0	1973.0	2.0	2.0
14	42.0	1286.0	78.0	585.0
15	368.0	127.0	1188.0	308.0
16	265.75	355.75	397.75	971.75
17	475.5	733.5	349.5	432.5

PFM

	A	C	G	T
01	0.238	0.42	0.153	0.189
02	0.094	0.274	0.072	0.56
03	0.076	0.018	0.849	0.057
04	0.011	0.013	0.051	0.926
05	0.036	0.922	0.004	0.039
06	0.016	0.217	0.013	0.753
07	0.021	0.001	0.969	0.01
08	0.002	0.002	0.001	0.996
09	0.006	0.982	0.0	0.012
10	0.005	0.068	0.005	0.923
11	0.003	0.0	0.994	0.004
12	0.0	0.001	0.002	0.997
13	0.007	0.991	0.001	0.001
14	0.021	0.646	0.039	0.294
15	0.185	0.064	0.597	0.155
16	0.133	0.179	0.2	0.488
17	0.239	0.368	0.176	0.217

PWM

	A	C	G	T
01	-0.05	0.517	-0.487	-0.279
02	-0.967	0.09	-1.231	0.804
03	-1.184	-2.579	1.22	-1.47
04	-3.083	-2.922	-1.57	1.306
05	-1.911	1.302	-4.028	-1.846
06	-2.691	-0.139	-2.885	1.101
07	-2.432	-5.15	1.352	-3.174
08	-4.625	-4.625	-5.15	1.38
09	-3.582	1.366	-5.573	-2.999
10	-3.737	-1.295	-3.825	1.303
11	-4.283	-5.573	1.377	-4.028
12	-5.573	-4.853	-4.439	1.38
13	-3.448	1.374	-4.853	-4.853
14	-2.432	0.947	-1.833	0.161
15	-0.301	-1.355	0.868	-0.478
16	-0.624	-0.334	-0.223	0.667
17	-0.046	0.387	-0.352	-0.14

Standard thresholds

P-value	Threshold
0.001	-1.07294
0.0005	0.55561
0.0001	3.98821