ZN816.H12INVIVO.1.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN816.H12INVIVO.1.P.C
Gene (human)	ZNF816 (GeneCards)
Gene synonyms (human)	ZNF816A
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	C

Motif length	16
Consensus	RvdvRdGGGGACMKKh
GC content	55.21%
Information content (bits; total / per base)	13.919 / 0.87
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.882	0.964	0.877	0.954	0.863	0.964	5.015	7.62	308.398	479.854

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF816A-like {2.3.3.73} (TFClass)
TFClass ID	TFClass: 2.3.3.73.1
HGNC	HGNC:26995
MGI
EntrezGene (human)	GeneID:125893 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN816_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q0VGE8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN816.H12INVIVO.1.P.C.pcm
PWM	ZN816.H12INVIVO.1.P.C.pwm
PFM	ZN816.H12INVIVO.1.P.C.pfm
Alignment	ZN816.H12INVIVO.1.P.C.words.tsv
Threshold to P-value map	ZN816.H12INVIVO.1.P.C.thr
Motif in other formats
JASPAR format	ZN816.H12INVIVO.1.P.C_jaspar_format.txt
MEME format	ZN816.H12INVIVO.1.P.C_meme_format.meme
Transfac format	ZN816.H12INVIVO.1.P.C_transfac_format.txt
Homer format	ZN816.H12INVIVO.1.P.C_homer_format_0.001.txt ZN816.H12INVIVO.1.P.C_homer_format_0.0005.txt ZN816.H12INVIVO.1.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	606.0	148.0	178.0	68.0
02	536.0	136.0	209.0	119.0
03	389.0	91.0	349.0	171.0
04	543.0	139.0	210.0	108.0
05	602.0	104.0	210.0	84.0
06	187.0	29.0	472.0	312.0
07	51.0	1.0	932.0	16.0
08	17.0	6.0	940.0	37.0
09	14.0	2.0	983.0	1.0
10	49.0	1.0	949.0	1.0
11	981.0	4.0	4.0	11.0
12	87.0	806.0	89.0	18.0
13	660.0	125.0	102.0	113.0
14	66.0	67.0	205.0	662.0
15	78.0	48.0	785.0	89.0
16	201.0	430.0	79.0	290.0

PFM

	A	C	G	T
01	0.606	0.148	0.178	0.068
02	0.536	0.136	0.209	0.119
03	0.389	0.091	0.349	0.171
04	0.543	0.139	0.21	0.108
05	0.602	0.104	0.21	0.084
06	0.187	0.029	0.472	0.312
07	0.051	0.001	0.932	0.016
08	0.017	0.006	0.94	0.037
09	0.014	0.002	0.983	0.001
10	0.049	0.001	0.949	0.001
11	0.981	0.004	0.004	0.011
12	0.087	0.806	0.089	0.018
13	0.66	0.125	0.102	0.113
14	0.066	0.067	0.205	0.662
15	0.078	0.048	0.785	0.089
16	0.201	0.43	0.079	0.29

PWM

	A	C	G	T
01	0.881	-0.52	-0.337	-1.284
02	0.759	-0.603	-0.178	-0.735
03	0.44	-0.999	0.332	-0.377
04	0.772	-0.582	-0.173	-0.83
05	0.875	-0.867	-0.173	-1.077
06	-0.288	-2.103	0.632	0.22
07	-1.563	-4.525	1.311	-2.653
08	-2.598	-3.484	1.319	-1.872
09	-2.773	-4.213	1.364	-4.525
10	-1.602	-4.525	1.329	-4.525
11	1.362	-3.783	-3.783	-2.985
12	-1.043	1.166	-1.02	-2.546
13	0.967	-0.686	-0.887	-0.786
14	-1.313	-1.298	-0.197	0.97
15	-1.15	-1.622	1.14	-1.02
16	-0.216	0.539	-1.137	0.147

Standard thresholds

P-value	Threshold
0.001	3.50521
0.0005	4.60436
0.0001	6.87231