ZN816.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN816.H12INVITRO.0.P.D
Gene (human)	ZNF816 (GeneCards)
Gene synonyms (human)	ZNF816A
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	24
Consensus	ddnvRvdvRdGGGGACMKGhndRR
GC content	56.04%
Information content (bits; total / per base)	17.486 / 0.729
Data sources	ChIP-Seq
Aligned words	905

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.896	0.968	0.886	0.96	0.892	0.984	6.616	10.479	335.125	507.796

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF816A-like {2.3.3.73} (TFClass)
TFClass ID	TFClass: 2.3.3.73.1
HGNC	HGNC:26995
MGI
EntrezGene (human)	GeneID:125893 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN816_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q0VGE8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN816.H12INVITRO.0.P.D.pcm
PWM	ZN816.H12INVITRO.0.P.D.pwm
PFM	ZN816.H12INVITRO.0.P.D.pfm
Alignment	ZN816.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN816.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN816.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN816.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN816.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN816.H12INVITRO.0.P.D_homer_format_0.001.txt ZN816.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN816.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	271.0	104.0	398.0	132.0
02	332.0	108.0	300.0	165.0
03	238.0	346.0	153.0	168.0
04	513.0	139.0	144.0	109.0
05	563.0	121.0	157.0	64.0
06	491.0	129.0	183.0	102.0
07	344.0	102.0	316.0	143.0
08	518.0	113.0	185.0	89.0
09	542.0	100.0	174.0	89.0
10	145.0	36.0	439.0	285.0
11	34.0	1.0	861.0	9.0
12	13.0	3.0	882.0	7.0
13	3.0	0.0	901.0	1.0
14	20.0	3.0	882.0	0.0
15	890.0	1.0	9.0	5.0
16	69.0	760.0	66.0	10.0
17	597.0	120.0	97.0	91.0
18	59.0	63.0	179.0	604.0
19	59.0	42.0	739.0	65.0
20	168.0	411.0	72.0	254.0
21	341.0	163.0	164.0	237.0
22	200.0	49.0	507.0	149.0
23	106.0	51.0	681.0	67.0
24	110.0	65.0	652.0	78.0

PFM

	A	C	G	T
01	0.299	0.115	0.44	0.146
02	0.367	0.119	0.331	0.182
03	0.263	0.382	0.169	0.186
04	0.567	0.154	0.159	0.12
05	0.622	0.134	0.173	0.071
06	0.543	0.143	0.202	0.113
07	0.38	0.113	0.349	0.158
08	0.572	0.125	0.204	0.098
09	0.599	0.11	0.192	0.098
10	0.16	0.04	0.485	0.315
11	0.038	0.001	0.951	0.01
12	0.014	0.003	0.975	0.008
13	0.003	0.0	0.996	0.001
14	0.022	0.003	0.975	0.0
15	0.983	0.001	0.01	0.006
16	0.076	0.84	0.073	0.011
17	0.66	0.133	0.107	0.101
18	0.065	0.07	0.198	0.667
19	0.065	0.046	0.817	0.072
20	0.186	0.454	0.08	0.281
21	0.377	0.18	0.181	0.262
22	0.221	0.054	0.56	0.165
23	0.117	0.056	0.752	0.074
24	0.122	0.072	0.72	0.086

PWM

	A	C	G	T
01	0.179	-0.769	0.562	-0.534
02	0.381	-0.731	0.28	-0.313
03	0.05	0.422	-0.388	-0.295
04	0.814	-0.482	-0.448	-0.722
05	0.907	-0.619	-0.362	-1.244
06	0.771	-0.556	-0.21	-0.788
07	0.416	-0.788	0.332	-0.454
08	0.824	-0.687	-0.2	-0.922
09	0.869	-0.807	-0.26	-0.922
10	-0.441	-1.799	0.659	0.229
11	-1.854	-4.435	1.331	-3.059
12	-2.741	-3.881	1.355	-3.266
13	-3.881	-4.897	1.376	-4.435
14	-2.352	-3.881	1.355	-4.897
15	1.364	-4.435	-3.059	-3.527
16	-1.171	1.206	-1.214	-2.969
17	0.966	-0.628	-0.837	-0.9
18	-1.323	-1.259	-0.232	0.977
19	-1.323	-1.652	1.178	-1.229
20	-0.295	0.594	-1.129	0.115
21	0.408	-0.325	-0.319	0.046
22	-0.122	-1.503	0.803	-0.414
23	-0.75	-1.464	1.097	-1.199
24	-0.713	-1.229	1.054	-1.051

Standard thresholds

P-value	Threshold
0.001	2.04181
0.0005	3.30466
0.0001	5.94896