ZN805.H12CORE.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN805.H12CORE.0.P.C
Gene (human)	ZNF805 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	25
Consensus	GAWGbRGCCACAAGCCAAGGRRYRY
GC content	58.51%
Information content (bits; total / per base)	31.896 / 1.276
Data sources	ChIP-Seq
Aligned words	204

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.855	0.855	0.849	0.849	0.869	0.869	11.722	11.722	127.0	127.0

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF460-like {2.3.3.54} (TFClass)
TFClass ID	TFClass: 2.3.3.54.3
HGNC	HGNC:23272
MGI
EntrezGene (human)	GeneID:390980 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN805_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q5CZA5 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN805.H12CORE.0.P.C.pcm
PWM	ZN805.H12CORE.0.P.C.pwm
PFM	ZN805.H12CORE.0.P.C.pfm
Alignment	ZN805.H12CORE.0.P.C.words.tsv
Threshold to P-value map	ZN805.H12CORE.0.P.C.thr
Motif in other formats
JASPAR format	ZN805.H12CORE.0.P.C_jaspar_format.txt
MEME format	ZN805.H12CORE.0.P.C_meme_format.meme
Transfac format	ZN805.H12CORE.0.P.C_transfac_format.txt
Homer format	ZN805.H12CORE.0.P.C_homer_format_0.001.txt ZN805.H12CORE.0.P.C_homer_format_0.0005.txt ZN805.H12CORE.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	10.0	4.0	188.0	2.0
02	175.0	4.0	25.0	0.0
03	43.0	7.0	18.0	136.0
04	3.0	1.0	199.0	1.0
05	12.0	68.0	76.0	48.0
06	51.0	5.0	136.0	12.0
07	10.0	4.0	183.0	7.0
08	2.0	197.0	1.0	4.0
09	2.0	186.0	0.0	16.0
10	181.0	4.0	19.0	0.0
11	8.0	168.0	9.0	19.0
12	163.0	2.0	31.0	8.0
13	199.0	1.0	4.0	0.0
14	4.0	2.0	197.0	1.0
15	0.0	202.0	2.0	0.0
16	5.0	195.0	2.0	2.0
17	197.0	4.0	2.0	1.0
18	187.0	2.0	11.0	4.0
19	7.0	2.0	192.0	3.0
20	11.0	6.0	186.0	1.0
21	159.0	10.0	30.0	5.0
22	158.0	17.0	24.0	5.0
23	27.0	28.0	13.0	136.0
24	40.0	15.0	142.0	7.0
25	10.0	151.0	9.0	34.0

PFM

	A	C	G	T
01	0.049	0.02	0.922	0.01
02	0.858	0.02	0.123	0.0
03	0.211	0.034	0.088	0.667
04	0.015	0.005	0.975	0.005
05	0.059	0.333	0.373	0.235
06	0.25	0.025	0.667	0.059
07	0.049	0.02	0.897	0.034
08	0.01	0.966	0.005	0.02
09	0.01	0.912	0.0	0.078
10	0.887	0.02	0.093	0.0
11	0.039	0.824	0.044	0.093
12	0.799	0.01	0.152	0.039
13	0.975	0.005	0.02	0.0
14	0.02	0.01	0.966	0.005
15	0.0	0.99	0.01	0.0
16	0.025	0.956	0.01	0.01
17	0.966	0.02	0.01	0.005
18	0.917	0.01	0.054	0.02
19	0.034	0.01	0.941	0.015
20	0.054	0.029	0.912	0.005
21	0.779	0.049	0.147	0.025
22	0.775	0.083	0.118	0.025
23	0.132	0.137	0.064	0.667
24	0.196	0.074	0.696	0.034
25	0.049	0.74	0.044	0.167

PWM

	A	C	G	T
01	-1.53	-2.284	1.286	-2.755
02	1.215	-2.284	-0.687	-3.673
03	-0.166	-1.838	-0.996	0.965
04	-2.492	-3.112	1.342	-3.112
05	-1.368	0.281	0.391	-0.059
06	0.0	-2.112	0.965	-1.368
07	-1.53	-2.284	1.259	-1.838
08	-2.755	1.332	-3.112	-2.284
09	-2.755	1.275	-3.673	-1.105
10	1.248	-2.284	-0.945	-3.673
11	-1.724	1.174	-1.623	-0.945
12	1.144	-2.755	-0.482	-1.724
13	1.342	-3.112	-2.284	-3.673
14	-2.284	-2.755	1.332	-3.112
15	-3.673	1.357	-2.755	-3.673
16	-2.112	1.322	-2.755	-2.755
17	1.332	-2.284	-2.755	-3.112
18	1.281	-2.755	-1.446	-2.284
19	-1.838	-2.755	1.307	-2.492
20	-1.446	-1.966	1.275	-3.112
21	1.12	-1.53	-0.513	-2.112
22	1.113	-1.049	-0.726	-2.112
23	-0.614	-0.579	-1.295	0.965
24	-0.236	-1.165	1.008	-1.838
25	-1.53	1.068	-1.623	-0.393

Standard thresholds

P-value	Threshold
0.001	-4.60589
0.0005	-2.96619
0.0001	0.56146