ZN799.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN799.H12INVIVO.0.P.C
Gene (human)	ZNF799 (GeneCards)
Gene synonyms (human)	ZNF842
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	31
Consensus	YbSYMMYMMYKSYKKYYYYRKKKdWTKGSYW
GC content	47.11%
Information content (bits; total / per base)	22.648 / 0.731
Data sources	ChIP-Seq
Aligned words	467

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.808	0.851	0.791	0.84	0.826	0.864	9.833	11.242	213.517	237.658

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF442-like {2.3.3.74} (TFClass)
TFClass ID	TFClass: 2.3.3.74.4
HGNC	HGNC:28071
MGI
EntrezGene (human)	GeneID:90576 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN799_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96GE5 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN799.H12INVIVO.0.P.C.pcm
PWM	ZN799.H12INVIVO.0.P.C.pwm
PFM	ZN799.H12INVIVO.0.P.C.pfm
Alignment	ZN799.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN799.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN799.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN799.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN799.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN799.H12INVIVO.0.P.C_homer_format_0.001.txt ZN799.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN799.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	26.0	168.0	30.0	243.0
02	53.0	56.0	217.0	141.0
03	51.0	71.0	304.0	41.0
04	28.0	369.0	26.0	44.0
05	347.0	57.0	20.0	43.0
06	342.0	52.0	36.0	37.0
07	38.0	191.0	16.0	222.0
08	301.0	99.0	17.0	50.0
09	48.0	347.0	27.0	45.0
10	32.0	136.0	19.0	280.0
11	35.0	76.0	79.0	277.0
12	58.0	80.0	304.0	25.0
13	7.0	142.0	14.0	304.0
14	11.0	42.0	43.0	371.0
15	16.0	26.0	346.0	79.0
16	11.0	119.0	11.0	326.0
17	21.0	328.0	15.0	103.0
18	15.0	90.0	13.0	349.0
19	61.0	291.0	27.0	88.0
20	289.0	30.0	102.0	46.0
21	46.0	24.0	347.0	50.0
22	30.0	18.0	99.0	320.0
23	36.0	19.0	359.0	53.0
24	258.0	22.0	95.0	92.0
25	88.0	12.0	16.0	351.0
26	11.0	12.0	6.0	438.0
27	18.0	6.0	334.0	109.0
28	21.0	19.0	398.0	29.0
29	27.0	308.0	93.0	39.0
30	70.0	104.0	18.0	275.0
31	45.0	39.0	36.0	347.0

PFM

	A	C	G	T
01	0.056	0.36	0.064	0.52
02	0.113	0.12	0.465	0.302
03	0.109	0.152	0.651	0.088
04	0.06	0.79	0.056	0.094
05	0.743	0.122	0.043	0.092
06	0.732	0.111	0.077	0.079
07	0.081	0.409	0.034	0.475
08	0.645	0.212	0.036	0.107
09	0.103	0.743	0.058	0.096
10	0.069	0.291	0.041	0.6
11	0.075	0.163	0.169	0.593
12	0.124	0.171	0.651	0.054
13	0.015	0.304	0.03	0.651
14	0.024	0.09	0.092	0.794
15	0.034	0.056	0.741	0.169
16	0.024	0.255	0.024	0.698
17	0.045	0.702	0.032	0.221
18	0.032	0.193	0.028	0.747
19	0.131	0.623	0.058	0.188
20	0.619	0.064	0.218	0.099
21	0.099	0.051	0.743	0.107
22	0.064	0.039	0.212	0.685
23	0.077	0.041	0.769	0.113
24	0.552	0.047	0.203	0.197
25	0.188	0.026	0.034	0.752
26	0.024	0.026	0.013	0.938
27	0.039	0.013	0.715	0.233
28	0.045	0.041	0.852	0.062
29	0.058	0.66	0.199	0.084
30	0.15	0.223	0.039	0.589
31	0.096	0.084	0.077	0.743

PWM

	A	C	G	T
01	-1.458	0.36	-1.322	0.726
02	-0.774	-0.721	0.614	0.186
03	-0.812	-0.489	0.949	-1.023
04	-1.387	1.142	-1.458	-0.955
05	1.081	-0.703	-1.703	-0.977
06	1.066	-0.793	-1.148	-1.122
07	-1.096	0.487	-1.909	0.636
08	0.939	-0.163	-1.853	-0.831
09	-0.87	1.081	-1.422	-0.933
10	-1.26	0.151	-1.751	0.867
11	-1.175	-0.422	-0.384	0.856
12	-0.687	-0.372	0.949	-1.495
13	-2.629	0.193	-2.03	0.949
14	-2.244	-1.0	-0.977	1.147
15	-1.909	-1.458	1.078	-0.384
16	-2.244	0.019	-2.244	1.018
17	-1.658	1.025	-1.968	-0.124
18	-1.968	-0.256	-2.096	1.086
19	-0.637	0.905	-1.422	-0.278
20	0.899	-1.322	-0.133	-0.912
21	-0.912	-1.533	1.081	-0.831
22	-1.322	-1.801	-0.163	1.0
23	-1.148	-1.751	1.114	-0.774
24	0.786	-1.615	-0.203	-0.235
25	-0.278	-2.168	-1.909	1.092
26	-2.244	-2.168	-2.753	1.313
27	-1.801	-2.753	1.043	-0.068
28	-1.658	-1.751	1.217	-1.354
29	-1.422	0.962	-0.224	-1.071
30	-0.503	-0.114	-1.801	0.849
31	-0.933	-1.071	-1.148	1.081

Standard thresholds

P-value	Threshold
0.001	0.96261
0.0005	2.19196
0.0001	4.83131