ZN793.H12INVIVO.1.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN793.H12INVIVO.1.P.C
Gene (human)	ZNF793 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	C

Motif length	15
Consensus	bbCTTGGGGCTCbbd
GC content	58.52%
Information content (bits; total / per base)	15.0 / 1.0
Data sources	ChIP-Seq
Aligned words	1003

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (8)	0.968	0.972	0.938	0.95	0.96	0.962	5.172	5.211	655.444	715.066

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.16
HGNC	HGNC:33115
MGI
EntrezGene (human)	GeneID:390927 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN793_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6ZN11 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN793.H12INVIVO.1.P.C.pcm
PWM	ZN793.H12INVIVO.1.P.C.pwm
PFM	ZN793.H12INVIVO.1.P.C.pfm
Alignment	ZN793.H12INVIVO.1.P.C.words.tsv
Threshold to P-value map	ZN793.H12INVIVO.1.P.C.thr
Motif in other formats
JASPAR format	ZN793.H12INVIVO.1.P.C_jaspar_format.txt
MEME format	ZN793.H12INVIVO.1.P.C_meme_format.meme
Transfac format	ZN793.H12INVIVO.1.P.C_transfac_format.txt
Homer format	ZN793.H12INVIVO.1.P.C_homer_format_0.001.txt ZN793.H12INVIVO.1.P.C_homer_format_0.0005.txt ZN793.H12INVIVO.1.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	87.0	184.0	274.0	458.0
02	120.0	148.0	567.0	168.0
03	8.0	880.0	25.0	90.0
04	0.0	51.0	1.0	951.0
05	36.0	85.0	72.0	810.0
06	2.0	0.0	996.0	5.0
07	35.0	15.0	911.0	42.0
08	77.0	55.0	816.0	55.0
09	209.0	4.0	774.0	16.0
10	1.0	624.0	3.0	375.0
11	1.0	5.0	0.0	997.0
12	0.0	865.0	0.0	138.0
13	103.0	247.0	201.0	452.0
14	112.0	128.0	448.0	315.0
15	178.0	110.0	315.0	400.0

PFM

	A	C	G	T
01	0.087	0.183	0.273	0.457
02	0.12	0.148	0.565	0.167
03	0.008	0.877	0.025	0.09
04	0.0	0.051	0.001	0.948
05	0.036	0.085	0.072	0.808
06	0.002	0.0	0.993	0.005
07	0.035	0.015	0.908	0.042
08	0.077	0.055	0.814	0.055
09	0.208	0.004	0.772	0.016
10	0.001	0.622	0.003	0.374
11	0.001	0.005	0.0	0.994
12	0.0	0.862	0.0	0.138
13	0.103	0.246	0.2	0.451
14	0.112	0.128	0.447	0.314
15	0.177	0.11	0.314	0.399

PWM

	A	C	G	T
01	-1.046	-0.307	0.088	0.599
02	-0.73	-0.523	0.812	-0.397
03	-3.256	1.251	-2.246	-1.012
04	-4.985	-1.566	-4.528	1.328
05	-1.901	-1.069	-1.231	1.168
06	-4.216	-4.985	1.374	-3.625
07	-1.928	-2.714	1.285	-1.753
08	-1.165	-1.493	1.175	-1.493
09	-0.181	-3.786	1.122	-2.656
10	-4.528	0.908	-3.978	0.4
11	-4.528	-3.625	-4.985	1.375
12	-4.985	1.233	-4.985	-0.592
13	-0.88	-0.015	-0.219	0.586
14	-0.798	-0.666	0.577	0.227
15	-0.34	-0.815	0.227	0.464

Standard thresholds

P-value	Threshold
0.001	2.76951
0.0005	4.02651
0.0001	6.60076