ZN793.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN793.H12INVITRO.0.P.D
Gene (human)	ZNF793 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	22
Consensus	bbCTYGGRGCTCbbdddvbbbb
GC content	58.77%
Information content (bits; total / per base)	16.625 / 0.756
Data sources	ChIP-Seq
Aligned words	972

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (8)	0.981	0.985	0.965	0.971	0.98	0.983	6.306	6.414	701.227	755.796

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.16
HGNC	HGNC:33115
MGI
EntrezGene (human)	GeneID:390927 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN793_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6ZN11 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN793.H12INVITRO.0.P.D.pcm
PWM	ZN793.H12INVITRO.0.P.D.pwm
PFM	ZN793.H12INVITRO.0.P.D.pfm
Alignment	ZN793.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN793.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN793.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN793.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN793.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN793.H12INVITRO.0.P.D_homer_format_0.001.txt ZN793.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN793.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	95.0	184.0	288.0	405.0
02	126.0	155.0	541.0	150.0
03	14.0	840.0	41.0	77.0
04	0.0	67.0	1.0	904.0
05	39.0	101.0	86.0	746.0
06	3.0	0.0	967.0	2.0
07	35.0	20.0	878.0	39.0
08	86.0	58.0	780.0	48.0
09	227.0	1.0	723.0	21.0
10	1.0	659.0	0.0	312.0
11	3.0	12.0	0.0	957.0
12	1.0	873.0	1.0	97.0
13	73.0	258.0	187.0	454.0
14	108.0	122.0	489.0	253.0
15	182.0	106.0	329.0	355.0
16	260.0	84.0	475.0	153.0
17	234.0	82.0	419.0	237.0
18	170.0	221.0	418.0	163.0
19	88.0	497.0	132.0	255.0
20	98.0	247.0	120.0	507.0
21	81.0	301.0	91.0	499.0
22	125.0	575.0	139.0	133.0

PFM

	A	C	G	T
01	0.098	0.189	0.296	0.417
02	0.13	0.159	0.557	0.154
03	0.014	0.864	0.042	0.079
04	0.0	0.069	0.001	0.93
05	0.04	0.104	0.088	0.767
06	0.003	0.0	0.995	0.002
07	0.036	0.021	0.903	0.04
08	0.088	0.06	0.802	0.049
09	0.234	0.001	0.744	0.022
10	0.001	0.678	0.0	0.321
11	0.003	0.012	0.0	0.985
12	0.001	0.898	0.001	0.1
13	0.075	0.265	0.192	0.467
14	0.111	0.126	0.503	0.26
15	0.187	0.109	0.338	0.365
16	0.267	0.086	0.489	0.157
17	0.241	0.084	0.431	0.244
18	0.175	0.227	0.43	0.168
19	0.091	0.511	0.136	0.262
20	0.101	0.254	0.123	0.522
21	0.083	0.31	0.094	0.513
22	0.129	0.592	0.143	0.137

PWM

	A	C	G	T
01	-0.928	-0.276	0.169	0.508
02	-0.65	-0.446	0.796	-0.478
03	-2.745	1.235	-1.745	-1.134
04	-4.958	-1.27	-4.5	1.309
05	-1.793	-0.868	-1.026	1.117
06	-3.948	-4.958	1.376	-4.186
07	-1.897	-2.422	1.279	-1.793
08	-1.026	-1.41	1.161	-1.594
09	-0.068	-4.5	1.086	-2.377
10	-4.5	0.993	-4.958	0.248
11	-3.948	-2.881	-4.958	1.365
12	-4.5	1.274	-4.5	-0.908
13	-1.186	0.059	-0.26	0.622
14	-0.802	-0.682	0.696	0.04
15	-0.287	-0.821	0.301	0.377
16	0.067	-1.049	0.667	-0.458
17	-0.037	-1.073	0.542	-0.025
18	-0.354	-0.094	0.539	-0.396
19	-1.003	0.712	-0.604	0.048
20	-0.898	0.016	-0.698	0.732
21	-1.085	0.213	-0.971	0.716
22	-0.658	0.857	-0.553	-0.597

Standard thresholds

P-value	Threshold
0.001	2.25006
0.0005	3.52931
0.0001	6.17431