ZN790.H12INVIVO.1.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN790.H12INVIVO.1.P.C
Gene (human)	ZNF790 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	C

Motif length	10
Consensus	RMdGCTCCCh
GC content	56.92%
Information content (bits; total / per base)	9.696 / 0.97
Data sources	ChIP-Seq
Aligned words	120

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.764	0.764	0.639	0.639	0.729	0.729	2.242	2.242	15.62	15.62

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.158
HGNC	HGNC:33114
MGI
EntrezGene (human)	GeneID:388536 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN790_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6PG37 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN790.H12INVIVO.1.P.C.pcm
PWM	ZN790.H12INVIVO.1.P.C.pwm
PFM	ZN790.H12INVIVO.1.P.C.pfm
Alignment	ZN790.H12INVIVO.1.P.C.words.tsv
Threshold to P-value map	ZN790.H12INVIVO.1.P.C.thr
Motif in other formats
JASPAR format	ZN790.H12INVIVO.1.P.C_jaspar_format.txt
MEME format	ZN790.H12INVIVO.1.P.C_meme_format.meme
Transfac format	ZN790.H12INVIVO.1.P.C_transfac_format.txt
Homer format	ZN790.H12INVIVO.1.P.C_homer_format_0.001.txt ZN790.H12INVIVO.1.P.C_homer_format_0.0005.txt ZN790.H12INVIVO.1.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	73.0	13.0	30.0	4.0
02	44.0	62.0	10.0	4.0
03	56.0	8.0	13.0	43.0
04	0.0	3.0	115.0	2.0
05	25.0	94.0	0.0	1.0
06	10.0	3.0	0.0	107.0
07	0.0	83.0	1.0	36.0
08	2.0	86.0	0.0	32.0
09	1.0	110.0	0.0	9.0
10	49.0	46.0	6.0	19.0

PFM

	A	C	G	T
01	0.608	0.108	0.25	0.033
02	0.367	0.517	0.083	0.033
03	0.467	0.067	0.108	0.358
04	0.0	0.025	0.958	0.017
05	0.208	0.783	0.0	0.008
06	0.083	0.025	0.0	0.892
07	0.0	0.692	0.008	0.3
08	0.017	0.717	0.0	0.267
09	0.008	0.917	0.0	0.075
10	0.408	0.383	0.05	0.158

PWM

	A	C	G	T
01	0.866	-0.787	0.0	-1.792
02	0.371	0.706	-1.025	-1.792
03	0.606	-1.221	-0.787	0.348
04	-3.261	-2.006	1.315	-2.278
05	-0.175	1.116	-3.261	-2.653
06	-1.025	-2.006	-3.261	1.244
07	-3.261	0.993	-2.653	0.176
08	-2.278	1.028	-3.261	0.062
09	-2.653	1.271	-3.261	-1.118
10	0.476	0.414	-1.467	-0.435

Standard thresholds

P-value	Threshold
0.001	4.968985
0.0005	5.73892
0.0001	7.31609