ZN790.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN790.H12INVIVO.0.P.C
Gene (human)	ZNF790 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	23
Consensus	KvRvdGCTYYChnhnvhYbYYhn
GC content	49.67%
Information content (bits; total / per base)	12.526 / 0.545
Data sources	ChIP-Seq
Aligned words	120

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.769	0.769	0.627	0.627	0.828	0.828	5.203	5.203	19.886	19.886

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.158
HGNC	HGNC:33114
MGI
EntrezGene (human)	GeneID:388536 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN790_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6PG37 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN790.H12INVIVO.0.P.C.pcm
PWM	ZN790.H12INVIVO.0.P.C.pwm
PFM	ZN790.H12INVIVO.0.P.C.pfm
Alignment	ZN790.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN790.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN790.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN790.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN790.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN790.H12INVIVO.0.P.C_homer_format_0.001.txt ZN790.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN790.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	5.0	11.0	15.0	89.0
02	63.0	34.0	14.0	9.0
03	76.0	16.0	25.0	3.0
04	41.0	56.0	20.0	3.0
05	47.0	12.0	18.0	43.0
06	6.0	4.0	97.0	13.0
07	26.0	89.0	3.0	2.0
08	1.0	3.0	0.0	116.0
09	0.0	60.0	6.0	54.0
10	6.0	81.0	3.0	30.0
11	5.0	101.0	3.0	11.0
12	44.0	47.0	2.0	27.0
13	22.0	23.0	35.0	40.0
14	11.0	49.0	10.0	50.0
15	13.0	32.0	13.0	62.0
16	14.0	31.0	66.0	9.0
17	42.0	32.0	7.0	39.0
18	16.0	18.0	8.0	78.0
19	14.0	19.0	48.0	39.0
20	1.0	77.0	20.0	22.0
21	6.0	50.0	12.0	52.0
22	62.0	18.0	14.0	26.0
23	19.0	19.0	50.0	32.0

PFM

	A	C	G	T
01	0.042	0.092	0.125	0.742
02	0.525	0.283	0.117	0.075
03	0.633	0.133	0.208	0.025
04	0.342	0.467	0.167	0.025
05	0.392	0.1	0.15	0.358
06	0.05	0.033	0.808	0.108
07	0.217	0.742	0.025	0.017
08	0.008	0.025	0.0	0.967
09	0.0	0.5	0.05	0.45
10	0.05	0.675	0.025	0.25
11	0.042	0.842	0.025	0.092
12	0.367	0.392	0.017	0.225
13	0.183	0.192	0.292	0.333
14	0.092	0.408	0.083	0.417
15	0.108	0.267	0.108	0.517
16	0.117	0.258	0.55	0.075
17	0.35	0.267	0.058	0.325
18	0.133	0.15	0.067	0.65
19	0.117	0.158	0.4	0.325
20	0.008	0.642	0.167	0.183
21	0.05	0.417	0.1	0.433
22	0.517	0.15	0.117	0.217
23	0.158	0.158	0.417	0.267

PWM

	A	C	G	T
01	-1.616	-0.939	-0.655	1.062
02	0.722	0.121	-0.719	-1.118
03	0.906	-0.596	-0.175	-2.006
04	0.302	0.606	-0.386	-2.006
05	0.435	-0.86	-0.486	0.348
06	-1.467	-1.792	1.147	-0.787
07	-0.137	1.062	-2.006	-2.278
08	-2.653	-2.006	-3.261	1.324
09	-3.261	0.674	-1.467	0.571
10	-1.467	0.969	-2.006	0.0
11	-1.616	1.187	-2.006	-0.939
12	0.371	0.435	-2.278	-0.101
13	-0.296	-0.254	0.149	0.278
14	-0.939	0.476	-1.025	0.495
15	-0.787	0.062	-0.787	0.706
16	-0.719	0.032	0.767	-1.118
17	0.325	0.062	-1.337	0.253
18	-0.596	-0.486	-1.221	0.932
19	-0.719	-0.435	0.456	0.253
20	-2.653	0.919	-0.386	-0.296
21	-1.467	0.495	-0.86	0.534
22	0.706	-0.486	-0.719	-0.137
23	-0.435	-0.435	0.495	0.062

Standard thresholds

P-value	Threshold
0.001	4.37301
0.0005	5.24361
0.0001	7.06921