ZN789.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN789.H12INVITRO.0.P.D
Gene (human)	ZNF789 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	20
Consensus	dvTCMCACTYMTGMCACCMv
GC content	55.16%
Information content (bits; total / per base)	22.545 / 1.127
Data sources	ChIP-Seq
Aligned words	548

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.964	0.964	0.955	0.955	0.972	0.972	9.736	9.736	255.276	255.276

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.61
HGNC	HGNC:27801
MGI
EntrezGene (human)	GeneID:285989 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN789_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q5FWF6 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN789.H12INVITRO.0.P.D.pcm
PWM	ZN789.H12INVITRO.0.P.D.pwm
PFM	ZN789.H12INVITRO.0.P.D.pfm
Alignment	ZN789.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN789.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN789.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN789.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN789.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN789.H12INVITRO.0.P.D_homer_format_0.001.txt ZN789.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN789.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	117.0	54.0	243.0	134.0
02	134.0	247.0	138.0	29.0
03	4.0	38.0	4.0	502.0
04	5.0	535.0	5.0	3.0
05	117.0	353.0	10.0	68.0
06	28.0	486.0	3.0	31.0
07	498.0	25.0	10.0	15.0
08	16.0	484.0	23.0	25.0
09	40.0	75.0	4.0	429.0
10	25.0	131.0	38.0	354.0
11	65.0	411.0	45.0	27.0
12	18.0	47.0	5.0	478.0
13	0.0	1.0	547.0	0.0
14	382.0	104.0	31.0	31.0
15	0.0	535.0	0.0	13.0
16	536.0	3.0	2.0	7.0
17	0.0	542.0	0.0	6.0
18	28.0	509.0	6.0	5.0
19	308.0	111.0	23.0	106.0
20	234.0	107.0	110.0	97.0

PFM

	A	C	G	T
01	0.214	0.099	0.443	0.245
02	0.245	0.451	0.252	0.053
03	0.007	0.069	0.007	0.916
04	0.009	0.976	0.009	0.005
05	0.214	0.644	0.018	0.124
06	0.051	0.887	0.005	0.057
07	0.909	0.046	0.018	0.027
08	0.029	0.883	0.042	0.046
09	0.073	0.137	0.007	0.783
10	0.046	0.239	0.069	0.646
11	0.119	0.75	0.082	0.049
12	0.033	0.086	0.009	0.872
13	0.0	0.002	0.998	0.0
14	0.697	0.19	0.057	0.057
15	0.0	0.976	0.0	0.024
16	0.978	0.005	0.004	0.013
17	0.0	0.989	0.0	0.011
18	0.051	0.929	0.011	0.009
19	0.562	0.203	0.042	0.193
20	0.427	0.195	0.201	0.177

PWM

	A	C	G	T
01	-0.156	-0.914	0.568	-0.022
02	-0.022	0.584	0.007	-1.511
03	-3.213	-1.253	-3.213	1.29
04	-3.048	1.354	-3.048	-3.41
05	-0.156	0.94	-2.482	-0.689
06	-1.544	1.258	-3.41	-1.448
07	1.282	-1.651	-2.482	-2.123
08	-2.065	1.254	-1.73	-1.651
09	-1.204	-0.593	-3.213	1.134
10	-1.651	-0.044	-1.253	0.942
11	-0.733	1.091	-1.09	-1.579
12	-1.957	-1.048	-3.048	1.241
13	-4.476	-3.985	1.376	-4.476
14	1.018	-0.272	-1.448	-1.448
15	-4.476	1.354	-4.476	-2.252
16	1.356	-3.41	-3.657	-2.782
17	-4.476	1.367	-4.476	-2.906
18	-1.544	1.304	-2.906	-3.048
19	0.804	-0.208	-1.73	-0.253
20	0.531	-0.244	-0.217	-0.341

Standard thresholds

P-value	Threshold
0.001	-0.80374
0.0005	0.69061
0.0001	3.86676