ZN787.H12INVIVO.1.S.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN787.H12INVIVO.1.S.D
Gene (human)	ZNF787 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf787
Gene synonyms (mouse)	Zfp787
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	12
Consensus	nWGCCTCSAYbn
GC content	57.47%
Information content (bits; total / per base)	12.283 / 1.024
Data sources	HT-SELEX
Aligned words	6578

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.971	0.959	0.915	0.901	0.822	0.813
Overall, 2 experiments	best	0.996	0.993	0.978	0.972	0.903	0.895
Methyl HT-SELEX, 1 experiments	median	0.947	0.924	0.852	0.83	0.741	0.732
Methyl HT-SELEX, 1 experiments	best	0.947	0.924	0.852	0.83	0.741	0.732
Non-Methyl HT-SELEX, 1 experiments	median	0.996	0.993	0.978	0.972	0.903	0.895
Non-Methyl HT-SELEX, 1 experiments	best	0.996	0.993	0.978	0.972	0.903	0.895

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.46
HGNC	HGNC:26998
MGI	MGI:1914359
EntrezGene (human)	GeneID:126208 (SSTAR profile)
EntrezGene (mouse)	GeneID:67109 (SSTAR profile)
UniProt ID (human)	ZN787_HUMAN
UniProt ID (mouse)	ZN787_MOUSE
UniProt AC (human)	Q6DD87 (TFClass)
UniProt AC (mouse)	Q8BIF9 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	ZN787.H12INVIVO.1.S.D.pcm
PWM	ZN787.H12INVIVO.1.S.D.pwm
PFM	ZN787.H12INVIVO.1.S.D.pfm
Alignment	ZN787.H12INVIVO.1.S.D.words.tsv
Threshold to P-value map	ZN787.H12INVIVO.1.S.D.thr
Motif in other formats
JASPAR format	ZN787.H12INVIVO.1.S.D_jaspar_format.txt
MEME format	ZN787.H12INVIVO.1.S.D_meme_format.meme
Transfac format	ZN787.H12INVIVO.1.S.D_transfac_format.txt
Homer format	ZN787.H12INVIVO.1.S.D_homer_format_0.001.txt ZN787.H12INVIVO.1.S.D_homer_format_0.0005.txt ZN787.H12INVIVO.1.S.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1332.5	2170.5	1582.5	1492.5
02	1071.75	605.75	777.75	4122.75
03	570.0	81.0	5834.0	93.0
04	11.0	6566.0	0.0	1.0
05	322.0	6256.0	0.0	0.0
06	0.0	1.0	0.0	6577.0
07	0.0	6567.0	0.0	11.0
08	1072.0	1273.0	4202.0	31.0
09	5399.0	314.0	673.0	192.0
10	266.0	1261.0	424.0	4627.0
11	622.0	852.0	2555.0	2549.0
12	1315.0	1862.0	1506.0	1895.0

PFM

	A	C	G	T
01	0.203	0.33	0.241	0.227
02	0.163	0.092	0.118	0.627
03	0.087	0.012	0.887	0.014
04	0.002	0.998	0.0	0.0
05	0.049	0.951	0.0	0.0
06	0.0	0.0	0.0	1.0
07	0.0	0.998	0.0	0.002
08	0.163	0.194	0.639	0.005
09	0.821	0.048	0.102	0.029
10	0.04	0.192	0.064	0.703
11	0.095	0.13	0.388	0.388
12	0.2	0.283	0.229	0.288

PWM

	A	C	G	T
01	-0.21	0.277	-0.038	-0.097
02	-0.427	-0.996	-0.747	0.918
03	-1.057	-2.985	1.265	-2.851
04	-4.826	1.383	-6.619	-6.244
05	-1.625	1.335	-6.619	-6.619
06	-6.619	-6.244	-6.619	1.385
07	-6.619	1.384	-6.619	-4.826
08	-0.427	-0.256	0.937	-3.904
09	1.188	-1.65	-0.892	-2.138
10	-1.815	-0.265	-1.352	1.034
11	-0.97	-0.656	0.44	0.438
12	-0.223	0.124	-0.088	0.142

Standard thresholds

P-value	Threshold
0.001	3.76948
0.0005	5.067875
0.0001	7.35562