ZN787.H12INVITRO.0.M.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN787.H12INVITRO.0.M.C
Gene (human)	ZNF787 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf787
Gene synonyms (mouse)	Zfp787
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	16
Consensus	nhRCCTCAGTTTACYh
GC content	51.59%
Information content (bits; total / per base)	21.507 / 1.344
Data sources	Methyl-HT-SELEX
Aligned words	897

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.976	0.97	0.931	0.92	0.809	0.813
Overall, 2 experiments	best	1.0	1.0	0.995	0.994	0.862	0.879
Methyl HT-SELEX, 1 experiments	median	1.0	1.0	0.995	0.994	0.862	0.879
Methyl HT-SELEX, 1 experiments	best	1.0	1.0	0.995	0.994	0.862	0.879
Non-Methyl HT-SELEX, 1 experiments	median	0.953	0.94	0.866	0.845	0.756	0.747
Non-Methyl HT-SELEX, 1 experiments	best	0.953	0.94	0.866	0.845	0.756	0.747

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.46
HGNC	HGNC:26998
MGI	MGI:1914359
EntrezGene (human)	GeneID:126208 (SSTAR profile)
EntrezGene (mouse)	GeneID:67109 (SSTAR profile)
UniProt ID (human)	ZN787_HUMAN
UniProt ID (mouse)	ZN787_MOUSE
UniProt AC (human)	Q6DD87 (TFClass)
UniProt AC (mouse)	Q8BIF9 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	ZN787.H12INVITRO.0.M.C.pcm
PWM	ZN787.H12INVITRO.0.M.C.pwm
PFM	ZN787.H12INVITRO.0.M.C.pfm
Alignment	ZN787.H12INVITRO.0.M.C.words.tsv
Threshold to P-value map	ZN787.H12INVITRO.0.M.C.thr
Motif in other formats
JASPAR format	ZN787.H12INVITRO.0.M.C_jaspar_format.txt
MEME format	ZN787.H12INVITRO.0.M.C_meme_format.meme
Transfac format	ZN787.H12INVITRO.0.M.C_transfac_format.txt
Homer format	ZN787.H12INVITRO.0.M.C_homer_format_0.001.txt ZN787.H12INVITRO.0.M.C_homer_format_0.0005.txt ZN787.H12INVITRO.0.M.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	233.75	242.75	236.75	183.75
02	111.0	200.0	74.0	512.0
03	112.0	53.0	694.0	38.0
04	156.0	729.0	9.0	3.0
05	4.0	889.0	4.0	0.0
06	0.0	0.0	2.0	895.0
07	0.0	897.0	0.0	0.0
08	869.0	2.0	25.0	1.0
09	10.0	0.0	887.0	0.0
10	0.0	7.0	0.0	890.0
11	4.0	3.0	5.0	885.0
12	3.0	2.0	12.0	880.0
13	595.0	295.0	5.0	2.0
14	5.0	844.0	8.0	40.0
15	57.0	717.0	48.0	75.0
16	143.25	387.25	126.25	240.25

PFM

	A	C	G	T
01	0.261	0.271	0.264	0.205
02	0.124	0.223	0.082	0.571
03	0.125	0.059	0.774	0.042
04	0.174	0.813	0.01	0.003
05	0.004	0.991	0.004	0.0
06	0.0	0.0	0.002	0.998
07	0.0	1.0	0.0	0.0
08	0.969	0.002	0.028	0.001
09	0.011	0.0	0.989	0.0
10	0.0	0.008	0.0	0.992
11	0.004	0.003	0.006	0.987
12	0.003	0.002	0.013	0.981
13	0.663	0.329	0.006	0.002
14	0.006	0.941	0.009	0.045
15	0.064	0.799	0.054	0.084
16	0.16	0.432	0.141	0.268

PWM

	A	C	G	T
01	0.041	0.079	0.054	-0.198
02	-0.696	-0.114	-1.094	0.821
03	-0.687	-1.418	1.125	-1.739
04	-0.36	1.174	-3.05	-3.873
05	-3.68	1.372	-3.68	-4.89
06	-4.89	-4.89	-4.112	1.378
07	-4.89	1.381	-4.89	-4.89
08	1.349	-4.112	-2.136	-4.427
09	-2.961	-4.89	1.369	-4.89
10	-4.89	-3.257	-4.89	1.373
11	-3.68	-3.873	-3.518	1.367
12	-3.873	-4.112	-2.803	1.362
13	0.971	0.272	-3.518	-4.112
14	-3.518	1.32	-3.148	-1.69
15	-1.348	1.157	-1.514	-1.08
16	-0.444	0.543	-0.569	0.068

Standard thresholds

P-value	Threshold
0.001	-2.17589
0.0005	-0.46749
0.0001	3.15156