ZN784.H12INVITRO.0.SM.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN784.H12INVITRO.0.SM.B
Gene (human)	ZNF784 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf784
Gene synonyms (mouse)	Zfp784
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	16
Consensus	ndddMGGTAGGTRbnn
GC content	53.94%
Information content (bits; total / per base)	15.701 / 0.981
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	2431

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 3 experiments	median	0.918	0.896	0.773	0.763	0.656	0.674
Overall, 3 experiments	best	0.963	0.947	0.798	0.801	0.672	0.684
Methyl HT-SELEX, 1 experiments	median	0.918	0.896	0.773	0.763	0.672	0.674
Methyl HT-SELEX, 1 experiments	best	0.918	0.896	0.773	0.763	0.672	0.674
Non-Methyl HT-SELEX, 2 experiments	median	0.78	0.766	0.675	0.675	0.592	0.607
Non-Methyl HT-SELEX, 2 experiments	best	0.963	0.947	0.798	0.801	0.656	0.684

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.40
HGNC	HGNC:33111
MGI	MGI:3606042
EntrezGene (human)	GeneID:147808 (SSTAR profile)
EntrezGene (mouse)	GeneID:654801 (SSTAR profile)
UniProt ID (human)	ZN784_HUMAN
UniProt ID (mouse)	ZN784_MOUSE
UniProt AC (human)	Q8NCA9 (TFClass)
UniProt AC (mouse)	Q8BI69 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	2
Methyl-HT-SELEX	1

PCM	ZN784.H12INVITRO.0.SM.B.pcm
PWM	ZN784.H12INVITRO.0.SM.B.pwm
PFM	ZN784.H12INVITRO.0.SM.B.pfm
Alignment	ZN784.H12INVITRO.0.SM.B.words.tsv
Threshold to P-value map	ZN784.H12INVITRO.0.SM.B.thr
Motif in other formats
JASPAR format	ZN784.H12INVITRO.0.SM.B_jaspar_format.txt
MEME format	ZN784.H12INVITRO.0.SM.B_meme_format.meme
Transfac format	ZN784.H12INVITRO.0.SM.B_transfac_format.txt
Homer format	ZN784.H12INVITRO.0.SM.B_homer_format_0.001.txt ZN784.H12INVITRO.0.SM.B_homer_format_0.0005.txt ZN784.H12INVITRO.0.SM.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	468.25	488.25	876.25	598.25
02	426.5	371.5	1117.5	515.5
03	348.0	201.0	1269.0	613.0
04	650.0	139.0	893.0	749.0
05	1671.0	582.0	103.0	75.0
06	0.0	1.0	2430.0	0.0
07	0.0	0.0	2431.0	0.0
08	0.0	2.0	33.0	2396.0
09	2431.0	0.0	0.0	0.0
10	157.0	0.0	2274.0	0.0
11	0.0	0.0	2430.0	1.0
12	7.0	0.0	18.0	2406.0
13	1482.0	207.0	515.0	227.0
14	274.0	937.0	900.0	320.0
15	398.25	596.25	849.25	587.25
16	496.0	469.0	849.0	617.0

PFM

	A	C	G	T
01	0.193	0.201	0.36	0.246
02	0.175	0.153	0.46	0.212
03	0.143	0.083	0.522	0.252
04	0.267	0.057	0.367	0.308
05	0.687	0.239	0.042	0.031
06	0.0	0.0	1.0	0.0
07	0.0	0.0	1.0	0.0
08	0.0	0.001	0.014	0.986
09	1.0	0.0	0.0	0.0
10	0.065	0.0	0.935	0.0
11	0.0	0.0	1.0	0.0
12	0.003	0.0	0.007	0.99
13	0.61	0.085	0.212	0.093
14	0.113	0.385	0.37	0.132
15	0.164	0.245	0.349	0.242
16	0.204	0.193	0.349	0.254

PWM

	A	C	G	T
01	-0.26	-0.218	0.365	-0.016
02	-0.353	-0.49	0.608	-0.164
03	-0.555	-1.1	0.735	0.009
04	0.067	-1.465	0.384	0.208
05	1.009	-0.043	-1.759	-2.07
06	-5.746	-5.331	1.383	-5.746
07	-5.746	-5.746	1.384	-5.746
08	-5.746	-5.039	-2.859	1.369
09	1.384	-5.746	-5.746	-5.746
10	-1.344	-5.746	1.317	-5.746
11	-5.746	-5.746	1.383	-5.331
12	-4.221	-5.746	-3.42	1.374
13	0.889	-1.071	-0.165	-0.979
14	-0.793	0.432	0.392	-0.639
15	-0.421	-0.019	0.334	-0.034
16	-0.202	-0.258	0.333	0.015

Standard thresholds

P-value	Threshold
0.001	0.72251
0.0005	2.33996
0.0001	5.63096