ZN782.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN782.H12RSNP.0.P.D
Gene (human)	ZNF782 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	YhbYRRKRRRGYYYWRRTKTYRG
GC content	55.54%
Information content (bits; total / per base)	17.434 / 0.758
Data sources	ChIP-Seq
Aligned words	151

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.868	0.868	0.853	0.853	0.874	0.874	7.402	7.402	63.495	63.495

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF25-like {2.3.3.69} (TFClass)
TFClass ID	TFClass: 2.3.3.69.5
HGNC	HGNC:33110
MGI
EntrezGene (human)	GeneID:158431 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN782_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6ZMW2 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN782.H12RSNP.0.P.D.pcm
PWM	ZN782.H12RSNP.0.P.D.pwm
PFM	ZN782.H12RSNP.0.P.D.pfm
Alignment	ZN782.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN782.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN782.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN782.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN782.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN782.H12RSNP.0.P.D_homer_format_0.001.txt ZN782.H12RSNP.0.P.D_homer_format_0.0005.txt ZN782.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	16.0	90.0	18.0	27.0
02	15.0	59.0	12.0	65.0
03	14.0	35.0	27.0	75.0
04	1.0	20.0	19.0	111.0
05	45.0	11.0	85.0	10.0
06	110.0	7.0	33.0	1.0
07	10.0	9.0	121.0	11.0
08	59.0	3.0	74.0	15.0
09	45.0	4.0	80.0	22.0
10	21.0	4.0	114.0	12.0
11	16.0	13.0	122.0	0.0
12	5.0	102.0	9.0	35.0
13	13.0	105.0	2.0	31.0
14	4.0	93.0	18.0	36.0
15	95.0	20.0	8.0	28.0
16	21.0	19.0	108.0	3.0
17	95.0	14.0	27.0	15.0
18	3.0	4.0	5.0	139.0
19	11.0	5.0	119.0	16.0
20	6.0	8.0	11.0	126.0
21	5.0	36.0	3.0	107.0
22	18.0	4.0	118.0	11.0
23	7.0	6.0	125.0	13.0

PFM

	A	C	G	T
01	0.106	0.596	0.119	0.179
02	0.099	0.391	0.079	0.43
03	0.093	0.232	0.179	0.497
04	0.007	0.132	0.126	0.735
05	0.298	0.073	0.563	0.066
06	0.728	0.046	0.219	0.007
07	0.066	0.06	0.801	0.073
08	0.391	0.02	0.49	0.099
09	0.298	0.026	0.53	0.146
10	0.139	0.026	0.755	0.079
11	0.106	0.086	0.808	0.0
12	0.033	0.675	0.06	0.232
13	0.086	0.695	0.013	0.205
14	0.026	0.616	0.119	0.238
15	0.629	0.132	0.053	0.185
16	0.139	0.126	0.715	0.02
17	0.629	0.093	0.179	0.099
18	0.02	0.026	0.033	0.921
19	0.073	0.033	0.788	0.106
20	0.04	0.053	0.073	0.834
21	0.033	0.238	0.02	0.709
22	0.119	0.026	0.781	0.073
23	0.046	0.04	0.828	0.086

PWM

	A	C	G	T
01	-0.816	0.85	-0.706	-0.322
02	-0.875	0.435	-1.079	0.53
03	-0.939	-0.073	-0.322	0.67
04	-2.851	-0.607	-0.655	1.057
05	0.17	-1.158	0.794	-1.243
06	1.048	-1.553	-0.13	-2.851
07	-1.243	-1.336	1.142	-1.158
08	0.435	-2.216	0.657	-0.875
09	0.17	-2.005	0.734	-0.517
10	-0.561	-2.005	1.083	-1.079
11	-0.816	-1.007	1.151	-3.437
12	-1.83	0.974	-1.336	-0.073
13	-1.007	1.002	-2.484	-0.19
14	-2.005	0.882	-0.706	-0.046
15	0.903	-0.607	-1.439	-0.288
16	-0.561	-0.655	1.03	-2.216
17	0.903	-0.939	-0.322	-0.875
18	-2.216	-2.005	-1.83	1.28
19	-1.158	-1.83	1.126	-0.816
20	-1.682	-1.439	-1.158	1.183
21	-1.83	-0.046	-2.216	1.021
22	-0.706	-2.005	1.118	-1.158
23	-1.553	-1.682	1.175	-1.007

Standard thresholds

P-value	Threshold
0.001	3.04476
0.0005	4.09251
0.0001	6.32841