ZN778.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN778.H12RSNP.0.P.D
Gene (human)	ZNF778 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	15
Consensus	RGvRbYGKhGTCYKb
GC content	64.23%
Information content (bits; total / per base)	11.853 / 0.79
Data sources	ChIP-Seq
Aligned words	402

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.787	0.879	0.715	0.803	0.774	0.898	3.162	4.151	229.886	336.222

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.63
HGNC	HGNC:26479
MGI
EntrezGene (human)	GeneID:197320 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN778_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96MU6 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN778.H12RSNP.0.P.D.pcm
PWM	ZN778.H12RSNP.0.P.D.pwm
PFM	ZN778.H12RSNP.0.P.D.pfm
Alignment	ZN778.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN778.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN778.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN778.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN778.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN778.H12RSNP.0.P.D_homer_format_0.001.txt ZN778.H12RSNP.0.P.D_homer_format_0.0005.txt ZN778.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	108.0	15.0	219.0	60.0
02	11.0	12.0	340.0	39.0
03	170.0	59.0	120.0	53.0
04	69.0	17.0	306.0	10.0
05	23.0	145.0	51.0	183.0
06	7.0	285.0	31.0	79.0
07	38.0	2.0	359.0	3.0
08	3.0	26.0	223.0	150.0
09	60.0	159.0	19.0	164.0
10	42.0	5.0	345.0	10.0
11	12.0	20.0	29.0	341.0
12	5.0	379.0	7.0	11.0
13	22.0	86.0	25.0	269.0
14	22.0	26.0	248.0	106.0
15	18.0	156.0	159.0	69.0

PFM

	A	C	G	T
01	0.269	0.037	0.545	0.149
02	0.027	0.03	0.846	0.097
03	0.423	0.147	0.299	0.132
04	0.172	0.042	0.761	0.025
05	0.057	0.361	0.127	0.455
06	0.017	0.709	0.077	0.197
07	0.095	0.005	0.893	0.007
08	0.007	0.065	0.555	0.373
09	0.149	0.396	0.047	0.408
10	0.104	0.012	0.858	0.025
11	0.03	0.05	0.072	0.848
12	0.012	0.943	0.017	0.027
13	0.055	0.214	0.062	0.669
14	0.055	0.065	0.617	0.264
15	0.045	0.388	0.396	0.172

PWM

	A	C	G	T
01	0.071	-1.822	0.771	-0.506
02	-2.099	-2.022	1.208	-0.924
03	0.52	-0.522	0.175	-0.627
04	-0.369	-1.707	1.104	-2.183
05	-1.426	0.362	-0.664	0.593
06	-2.485	1.033	-1.144	-0.237
07	-0.949	-3.372	1.263	-3.121
08	-3.121	-1.311	0.789	0.396
09	-0.506	0.453	-1.605	0.484
10	-0.852	-2.753	1.223	-2.183
11	-2.022	-1.557	-1.207	1.211
12	-2.753	1.317	-2.485	-2.099
13	-1.468	-0.153	-1.348	0.975
14	-1.468	-1.311	0.894	0.053
15	-1.655	0.434	0.453	-0.369

Standard thresholds

P-value	Threshold
0.001	4.33121
0.0005	5.23316
0.0001	7.11246