ZN776.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN776.H12INVITRO.0.P.D
Gene (human)	ZNF776 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	RGCRGMTGCCRRCRbYdKRCYYY
GC content	58.54%
Information content (bits; total / per base)	18.275 / 0.795
Data sources	ChIP-Seq
Aligned words	787

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.921	0.937	0.896	0.911	0.891	0.909	10.436	10.717	186.689	219.032

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF548-like {2.3.3.53} (TFClass)
TFClass ID	TFClass: 2.3.3.53.2
HGNC	HGNC:26765
MGI
EntrezGene (human)	GeneID:284309 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN776_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q68DI1 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN776.H12INVITRO.0.P.D.pcm
PWM	ZN776.H12INVITRO.0.P.D.pwm
PFM	ZN776.H12INVITRO.0.P.D.pfm
Alignment	ZN776.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN776.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN776.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN776.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN776.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN776.H12INVITRO.0.P.D_homer_format_0.001.txt ZN776.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN776.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	489.0	91.0	121.0	86.0
02	56.0	55.0	636.0	40.0
03	34.0	632.0	88.0	33.0
04	505.0	55.0	152.0	75.0
05	38.0	89.0	640.0	20.0
06	590.0	134.0	35.0	28.0
07	30.0	62.0	61.0	634.0
08	47.0	54.0	669.0	17.0
09	65.0	661.0	33.0	28.0
10	35.0	634.0	16.0	102.0
11	334.0	45.0	357.0	51.0
12	146.0	63.0	568.0	10.0
13	12.0	711.0	13.0	51.0
14	411.0	46.0	261.0	69.0
15	38.0	340.0	104.0	305.0
16	39.0	389.0	81.0	278.0
17	360.0	53.0	208.0	166.0
18	40.0	100.0	109.0	538.0
19	137.0	91.0	493.0	66.0
20	19.0	696.0	34.0	38.0
21	57.0	87.0	39.0	604.0
22	16.0	117.0	48.0	606.0
23	63.0	539.0	87.0	98.0

PFM

	A	C	G	T
01	0.621	0.116	0.154	0.109
02	0.071	0.07	0.808	0.051
03	0.043	0.803	0.112	0.042
04	0.642	0.07	0.193	0.095
05	0.048	0.113	0.813	0.025
06	0.75	0.17	0.044	0.036
07	0.038	0.079	0.078	0.806
08	0.06	0.069	0.85	0.022
09	0.083	0.84	0.042	0.036
10	0.044	0.806	0.02	0.13
11	0.424	0.057	0.454	0.065
12	0.186	0.08	0.722	0.013
13	0.015	0.903	0.017	0.065
14	0.522	0.058	0.332	0.088
15	0.048	0.432	0.132	0.388
16	0.05	0.494	0.103	0.353
17	0.457	0.067	0.264	0.211
18	0.051	0.127	0.139	0.684
19	0.174	0.116	0.626	0.084
20	0.024	0.884	0.043	0.048
21	0.072	0.111	0.05	0.767
22	0.02	0.149	0.061	0.77
23	0.08	0.685	0.111	0.125

PWM

	A	C	G	T
01	0.905	-0.761	-0.481	-0.817
02	-1.236	-1.253	1.167	-1.561
03	-1.716	1.161	-0.794	-1.745
04	0.937	-1.253	-0.256	-0.951
05	-1.61	-0.783	1.174	-2.215
06	1.093	-0.38	-1.688	-1.9
07	-1.835	-1.137	-1.153	1.164
08	-1.405	-1.271	1.218	-2.364
09	-1.091	1.206	-1.745	-1.9
10	-1.688	1.164	-2.419	-0.649
11	0.526	-1.447	0.592	-1.326
12	-0.295	-1.121	1.055	-2.834
13	-2.675	1.279	-2.605	-1.326
14	0.732	-1.426	0.281	-1.032
15	-1.61	0.543	-0.63	0.435
16	-1.585	0.677	-0.876	0.343
17	0.6	-1.289	0.055	-0.168
18	-1.561	-0.669	-0.584	1.001
19	-0.358	-0.761	0.914	-1.076
20	-2.262	1.257	-1.716	-1.61
21	-1.218	-0.805	-1.585	1.116
22	-2.419	-0.514	-1.385	1.119
23	-1.121	1.002	-0.805	-0.689

Standard thresholds

P-value	Threshold
0.001	2.44086
0.0005	3.54651
0.0001	5.91636