ZN771.H12INVITRO.0.SM.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN771.H12INVITRO.0.SM.B
Gene (human)	ZNF771 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf771
Gene synonyms (mouse)	Zfp771
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	13
Consensus	hAATGGTTAGCGY
GC content	48.1%
Information content (bits; total / per base)	19.388 / 1.491
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	9999

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 4 experiments	median	0.999	0.999	0.959	0.96	0.809	0.829
Overall, 4 experiments	best	1.0	1.0	1.0	0.999	0.905	0.916
Methyl HT-SELEX, 2 experiments	median	0.999	0.999	0.961	0.962	0.829	0.847
Methyl HT-SELEX, 2 experiments	best	1.0	1.0	1.0	0.999	0.905	0.916
Non-Methyl HT-SELEX, 2 experiments	median	0.964	0.963	0.866	0.874	0.745	0.766
Non-Methyl HT-SELEX, 2 experiments	best	1.0	1.0	0.996	0.995	0.865	0.88

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF764-like {2.3.3.39} (TFClass)
TFClass ID	TFClass: 2.3.3.39.3
HGNC	HGNC:29653
MGI	MGI:2442050
EntrezGene (human)	GeneID:51333 (SSTAR profile)
EntrezGene (mouse)	GeneID:244216 (SSTAR profile)
UniProt ID (human)	ZN771_HUMAN
UniProt ID (mouse)	ZN771_MOUSE
UniProt AC (human)	Q7L3S4 (TFClass)
UniProt AC (mouse)	Q8BJ90 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	2
Methyl-HT-SELEX	2

PCM	ZN771.H12INVITRO.0.SM.B.pcm
PWM	ZN771.H12INVITRO.0.SM.B.pwm
PFM	ZN771.H12INVITRO.0.SM.B.pfm
Alignment	ZN771.H12INVITRO.0.SM.B.words.tsv
Threshold to P-value map	ZN771.H12INVITRO.0.SM.B.thr
Motif in other formats
JASPAR format	ZN771.H12INVITRO.0.SM.B_jaspar_format.txt
MEME format	ZN771.H12INVITRO.0.SM.B_meme_format.meme
Transfac format	ZN771.H12INVITRO.0.SM.B_transfac_format.txt
Homer format	ZN771.H12INVITRO.0.SM.B_homer_format_0.001.txt ZN771.H12INVITRO.0.SM.B_homer_format_0.0005.txt ZN771.H12INVITRO.0.SM.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1836.0	3681.0	1507.0	2975.0
02	9177.5	43.5	699.5	78.5
03	7215.0	68.0	2622.0	94.0
04	9.0	58.0	49.0	9883.0
05	8.0	4.0	9984.0	3.0
06	2.0	3.0	9994.0	0.0
07	2.0	4.0	14.0	9979.0
08	4.0	59.0	5.0	9931.0
09	9968.0	8.0	19.0	4.0
10	14.0	17.0	9893.0	75.0
11	565.0	8406.0	301.0	727.0
12	268.0	248.0	9203.0	280.0
13	1325.75	5385.75	251.75	3035.75

PFM

	A	C	G	T
01	0.184	0.368	0.151	0.298
02	0.918	0.004	0.07	0.008
03	0.722	0.007	0.262	0.009
04	0.001	0.006	0.005	0.988
05	0.001	0.0	0.998	0.0
06	0.0	0.0	0.999	0.0
07	0.0	0.0	0.001	0.998
08	0.0	0.006	0.001	0.993
09	0.997	0.001	0.002	0.0
10	0.001	0.002	0.989	0.008
11	0.057	0.841	0.03	0.073
12	0.027	0.025	0.92	0.028
13	0.133	0.539	0.025	0.304

PWM

	A	C	G	T
01	-0.308	0.387	-0.505	0.174
02	1.3	-4.001	-1.271	-3.433
03	1.059	-3.572	0.048	-3.257
04	-5.4	-3.725	-3.887	1.374
05	-5.492	-5.984	1.384	-6.157
06	-6.366	-6.157	1.385	-6.991
07	-6.366	-5.984	-5.034	1.384
08	-5.984	-3.709	-5.837	1.379
09	1.382	-5.492	-4.766	-5.984
10	-5.034	-4.865	1.375	-3.477
11	-1.484	1.212	-2.11	-1.233
12	-2.225	-2.302	1.303	-2.182
13	-0.633	0.767	-2.287	0.194

Standard thresholds

P-value	Threshold
0.001	-2.48629
0.0005	-0.59669
0.0001	3.343145