| Motif | ZN770.H12RSNP.0.P.B |
| Gene (human) | ZNF770 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Znf770 |
| Gene synonyms (mouse) | Zfp770 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | ZN770.H12RSNP.0.P.B |
| Gene (human) | ZNF770 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Znf770 |
| Gene synonyms (mouse) | Zfp770 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 11 |
| Consensus | dGGAGGCYGvR |
| GC content | 70.54% |
| Information content (bits; total / per base) | 13.821 / 1.256 |
| Data sources | ChIP-Seq |
| Aligned words | 491 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 2 (12) | 0.855 | 0.886 | 0.635 | 0.712 | 0.95 | 0.956 | 4.369 | 4.748 | 262.036 | 337.347 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 3.824 | 4.145 | 0.135 | 0.058 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | Multiple dispersed zinc fingers {2.3.4} (TFClass) |
| TF subfamily | Unclassified {2.3.4.0} (TFClass) |
| TFClass ID | TFClass: 2.3.4.0.26 |
| HGNC | HGNC:26061 |
| MGI | MGI:2445100 |
| EntrezGene (human) | GeneID:54989 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:228491 (SSTAR profile) |
| UniProt ID (human) | ZN770_HUMAN |
| UniProt ID (mouse) | ZN770_MOUSE |
| UniProt AC (human) | Q6IQ21 (TFClass) |
| UniProt AC (mouse) | Q8BIQ8 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | ZN770.H12RSNP.0.P.B.pcm |
| PWM | ZN770.H12RSNP.0.P.B.pwm |
| PFM | ZN770.H12RSNP.0.P.B.pfm |
| Alignment | ZN770.H12RSNP.0.P.B.words.tsv |
| Threshold to P-value map | ZN770.H12RSNP.0.P.B.thr |
| Motif in other formats | |
| JASPAR format | ZN770.H12RSNP.0.P.B_jaspar_format.txt |
| MEME format | ZN770.H12RSNP.0.P.B_meme_format.meme |
| Transfac format | ZN770.H12RSNP.0.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 119.0 | 50.0 | 206.0 | 116.0 |
| 02 | 66.0 | 8.0 | 411.0 | 6.0 |
| 03 | 1.0 | 1.0 | 489.0 | 0.0 |
| 04 | 490.0 | 0.0 | 0.0 | 1.0 |
| 05 | 1.0 | 1.0 | 488.0 | 1.0 |
| 06 | 0.0 | 1.0 | 486.0 | 4.0 |
| 07 | 2.0 | 485.0 | 1.0 | 3.0 |
| 08 | 22.0 | 156.0 | 1.0 | 312.0 |
| 09 | 59.0 | 34.0 | 389.0 | 9.0 |
| 10 | 245.0 | 52.0 | 167.0 | 27.0 |
| 11 | 82.0 | 68.0 | 316.0 | 25.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.242 | 0.102 | 0.42 | 0.236 |
| 02 | 0.134 | 0.016 | 0.837 | 0.012 |
| 03 | 0.002 | 0.002 | 0.996 | 0.0 |
| 04 | 0.998 | 0.0 | 0.0 | 0.002 |
| 05 | 0.002 | 0.002 | 0.994 | 0.002 |
| 06 | 0.0 | 0.002 | 0.99 | 0.008 |
| 07 | 0.004 | 0.988 | 0.002 | 0.006 |
| 08 | 0.045 | 0.318 | 0.002 | 0.635 |
| 09 | 0.12 | 0.069 | 0.792 | 0.018 |
| 10 | 0.499 | 0.106 | 0.34 | 0.055 |
| 11 | 0.167 | 0.138 | 0.644 | 0.051 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.031 | -0.88 | 0.513 | -0.056 |
| 02 | -0.61 | -2.566 | 1.2 | -2.801 |
| 03 | -3.887 | -3.887 | 1.373 | -4.385 |
| 04 | 1.375 | -4.385 | -4.385 | -3.887 |
| 05 | -3.887 | -3.887 | 1.371 | -3.887 |
| 06 | -4.385 | -3.887 | 1.367 | -3.109 |
| 07 | -3.556 | 1.365 | -3.887 | -3.308 |
| 08 | -1.664 | 0.237 | -3.887 | 0.925 |
| 09 | -0.719 | -1.252 | 1.145 | -2.467 |
| 10 | 0.685 | -0.842 | 0.305 | -1.471 |
| 11 | -0.397 | -0.581 | 0.938 | -1.544 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.15041 |
| 0.0005 | 4.39604 |
| 0.0001 | 6.97344 |