ZN770.H12INVIVO.1.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN770.H12INVIVO.1.P.B
Gene (human)	ZNF770 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf770
Gene synonyms (mouse)	Zfp770
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	21
Consensus	dGGAGGCYRvRRnvRSvRvvb
GC content	66.67%
Information content (bits; total / per base)	16.45 / 0.783
Data sources	ChIP-Seq
Aligned words	986

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (12)	0.825	0.861	0.675	0.742	0.946	0.952	8.289	9.762	240.328	260.292

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	2.659	2.587	0.121	0.058

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.26
HGNC	HGNC:26061
MGI	MGI:2445100
EntrezGene (human)	GeneID:54989 (SSTAR profile)
EntrezGene (mouse)	GeneID:228491 (SSTAR profile)
UniProt ID (human)	ZN770_HUMAN
UniProt ID (mouse)	ZN770_MOUSE
UniProt AC (human)	Q6IQ21 (TFClass)
UniProt AC (mouse)	Q8BIQ8 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN770.H12INVIVO.1.P.B.pcm
PWM	ZN770.H12INVIVO.1.P.B.pwm
PFM	ZN770.H12INVIVO.1.P.B.pfm
Alignment	ZN770.H12INVIVO.1.P.B.words.tsv
Threshold to P-value map	ZN770.H12INVIVO.1.P.B.thr
Motif in other formats
JASPAR format	ZN770.H12INVIVO.1.P.B_jaspar_format.txt
MEME format	ZN770.H12INVIVO.1.P.B_meme_format.meme
Transfac format	ZN770.H12INVIVO.1.P.B_transfac_format.txt
Homer format	ZN770.H12INVIVO.1.P.B_homer_format_0.001.txt ZN770.H12INVIVO.1.P.B_homer_format_0.0005.txt ZN770.H12INVIVO.1.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	243.0	96.0	451.0	196.0
02	136.0	19.0	814.0	17.0
03	25.0	4.0	954.0	3.0
04	968.0	5.0	8.0	5.0
05	13.0	4.0	964.0	5.0
06	13.0	6.0	958.0	9.0
07	15.0	949.0	6.0	16.0
08	66.0	320.0	27.0	573.0
09	131.0	90.0	739.0	26.0
10	516.0	110.0	304.0	56.0
11	169.0	83.0	682.0	52.0
12	199.0	119.0	611.0	57.0
13	150.0	355.0	252.0	229.0
14	312.0	113.0	449.0	112.0
15	141.0	115.0	664.0	66.0
16	136.0	173.0	620.0	57.0
17	557.0	123.0	228.0	78.0
18	138.0	100.0	694.0	54.0
19	193.0	171.0	556.0	66.0
20	455.0	203.0	221.0	107.0
21	132.0	186.0	259.0	409.0

PFM

	A	C	G	T
01	0.246	0.097	0.457	0.199
02	0.138	0.019	0.826	0.017
03	0.025	0.004	0.968	0.003
04	0.982	0.005	0.008	0.005
05	0.013	0.004	0.978	0.005
06	0.013	0.006	0.972	0.009
07	0.015	0.962	0.006	0.016
08	0.067	0.325	0.027	0.581
09	0.133	0.091	0.749	0.026
10	0.523	0.112	0.308	0.057
11	0.171	0.084	0.692	0.053
12	0.202	0.121	0.62	0.058
13	0.152	0.36	0.256	0.232
14	0.316	0.115	0.455	0.114
15	0.143	0.117	0.673	0.067
16	0.138	0.175	0.629	0.058
17	0.565	0.125	0.231	0.079
18	0.14	0.101	0.704	0.055
19	0.196	0.173	0.564	0.067
20	0.461	0.206	0.224	0.109
21	0.134	0.189	0.263	0.415

PWM

	A	C	G	T
01	-0.014	-0.932	0.601	-0.227
02	-0.589	-2.483	1.19	-2.585
03	-2.229	-3.77	1.348	-3.962
04	1.363	-3.609	-3.24	-3.609
05	-2.825	-3.77	1.359	-3.609
06	-2.825	-3.47	1.352	-3.142
07	-2.698	1.343	-3.47	-2.639
08	-1.299	0.259	-2.157	0.84
09	-0.626	-0.996	1.093	-2.192
10	0.735	-0.798	0.208	-1.459
11	-0.374	-1.075	1.013	-1.53
12	-0.212	-0.721	0.904	-1.441
13	-0.492	0.363	0.022	-0.073
14	0.234	-0.772	0.597	-0.781
15	-0.553	-0.755	0.987	-1.299
16	-0.589	-0.351	0.918	-1.441
17	0.811	-0.688	-0.077	-1.136
18	-0.575	-0.892	1.031	-1.494
19	-0.243	-0.363	0.81	-1.299
20	0.61	-0.193	-0.108	-0.826
21	-0.619	-0.279	0.049	0.504

Standard thresholds

P-value	Threshold
0.001	2.49191
0.0005	3.69371
0.0001	6.22021