MotifZN770.H12INVITRO.0.P.D
Gene (human)ZNF770
(GeneCards)
Gene synonyms (human)
Gene (mouse)Znf770
Gene synonyms (mouse)Zfp770
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length12
ConsensusnRGAGGCYRvvv
GC content67.88%
Information content (bits; total / per base)11.135 / 0.928
Data sourcesChIP-Seq
Aligned words998

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (12) 0.859 0.887 0.65 0.716 0.957 0.964 4.665 5.087 273.423 352.886

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 2.735 2.796 0.141 0.066
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMultiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamilyUnclassified {2.3.4.0} (TFClass)
TFClass IDTFClass: 2.3.4.0.26
HGNCHGNC:26061
MGIMGI:2445100
EntrezGene (human)GeneID:54989
(SSTAR profile)
EntrezGene (mouse)GeneID:228491
(SSTAR profile)
UniProt ID (human)ZN770_HUMAN
UniProt ID (mouse)ZN770_MOUSE
UniProt AC (human)Q6IQ21
(TFClass)
UniProt AC (mouse)Q8BIQ8
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01230.0146.0293.0329.0
02153.031.0753.061.0
0327.05.0962.04.0
04983.03.04.08.0
0521.05.0971.01.0
0615.014.0919.050.0
0720.0897.017.064.0
0882.0405.024.0487.0
09193.0121.0642.042.0
10356.0219.0346.077.0
11229.0143.0544.082.0
12226.0140.0525.0107.0
PFM
ACGT
010.230.1460.2940.33
020.1530.0310.7550.061
030.0270.0050.9640.004
040.9850.0030.0040.008
050.0210.0050.9730.001
060.0150.0140.9210.05
070.020.8990.0170.064
080.0820.4060.0240.488
090.1930.1210.6430.042
100.3570.2190.3470.077
110.2290.1430.5450.082
120.2260.140.5260.107
PWM
ACGT
01-0.081-0.5310.160.275
02-0.485-2.0381.1-1.388
03-2.169-3.621.344-3.781
041.366-3.973-3.781-3.252
05-2.403-3.621.354-4.523
06-2.709-2.7711.299-1.58
07-2.4481.275-2.596-1.341
08-1.0990.482-2.2790.665
09-0.255-0.7160.941-1.748
100.353-0.1290.325-1.16
11-0.085-0.5520.776-1.099
12-0.098-0.5720.74-0.838
Standard thresholds
P-value Threshold
0.001 4.420765
0.0005 5.37567
0.0001 7.33294