ZN770.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN770.H12INVITRO.0.P.D
Gene (human)	ZNF770 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf770
Gene synonyms (mouse)	Zfp770
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	12
Consensus	nRGAGGCYRvvv
GC content	67.88%
Information content (bits; total / per base)	11.135 / 0.928
Data sources	ChIP-Seq
Aligned words	998

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (12)	0.859	0.887	0.65	0.716	0.957	0.964	4.665	5.087	273.423	352.886

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	2.735	2.796	0.141	0.066

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.26
HGNC	HGNC:26061
MGI	MGI:2445100
EntrezGene (human)	GeneID:54989 (SSTAR profile)
EntrezGene (mouse)	GeneID:228491 (SSTAR profile)
UniProt ID (human)	ZN770_HUMAN
UniProt ID (mouse)	ZN770_MOUSE
UniProt AC (human)	Q6IQ21 (TFClass)
UniProt AC (mouse)	Q8BIQ8 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN770.H12INVITRO.0.P.D.pcm
PWM	ZN770.H12INVITRO.0.P.D.pwm
PFM	ZN770.H12INVITRO.0.P.D.pfm
Alignment	ZN770.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN770.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN770.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN770.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN770.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN770.H12INVITRO.0.P.D_homer_format_0.001.txt ZN770.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN770.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	230.0	146.0	293.0	329.0
02	153.0	31.0	753.0	61.0
03	27.0	5.0	962.0	4.0
04	983.0	3.0	4.0	8.0
05	21.0	5.0	971.0	1.0
06	15.0	14.0	919.0	50.0
07	20.0	897.0	17.0	64.0
08	82.0	405.0	24.0	487.0
09	193.0	121.0	642.0	42.0
10	356.0	219.0	346.0	77.0
11	229.0	143.0	544.0	82.0
12	226.0	140.0	525.0	107.0

PFM

	A	C	G	T
01	0.23	0.146	0.294	0.33
02	0.153	0.031	0.755	0.061
03	0.027	0.005	0.964	0.004
04	0.985	0.003	0.004	0.008
05	0.021	0.005	0.973	0.001
06	0.015	0.014	0.921	0.05
07	0.02	0.899	0.017	0.064
08	0.082	0.406	0.024	0.488
09	0.193	0.121	0.643	0.042
10	0.357	0.219	0.347	0.077
11	0.229	0.143	0.545	0.082
12	0.226	0.14	0.526	0.107

PWM

	A	C	G	T
01	-0.081	-0.531	0.16	0.275
02	-0.485	-2.038	1.1	-1.388
03	-2.169	-3.62	1.344	-3.781
04	1.366	-3.973	-3.781	-3.252
05	-2.403	-3.62	1.354	-4.523
06	-2.709	-2.771	1.299	-1.58
07	-2.448	1.275	-2.596	-1.341
08	-1.099	0.482	-2.279	0.665
09	-0.255	-0.716	0.941	-1.748
10	0.353	-0.129	0.325	-1.16
11	-0.085	-0.552	0.776	-1.099
12	-0.098	-0.572	0.74	-0.838

Standard thresholds

P-value	Threshold
0.001	4.420765
0.0005	5.37567
0.0001	7.33294