ZN768.H12INVITRO.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN768.H12INVITRO.1.P.D
Gene (human)	ZNF768 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf768
Gene synonyms (mouse)	Zfp768
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	23
Consensus	bvRYYYRYCYRARGYCACACAGC
GC content	55.0%
Information content (bits; total / per base)	25.261 / 1.098
Data sources	ChIP-Seq
Aligned words	786

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (22)	0.905	0.981	0.877	0.958	0.923	0.993	10.831	13.283	426.629	631.886

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.95
HGNC	HGNC:26273
MGI	MGI:2384582
EntrezGene (human)	GeneID:79724 (SSTAR profile)
EntrezGene (mouse)	GeneID:233890 (SSTAR profile)
UniProt ID (human)	ZN768_HUMAN
UniProt ID (mouse)	ZN768_MOUSE
UniProt AC (human)	Q9H5H4 (TFClass)
UniProt AC (mouse)	Q8R0T2 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN768.H12INVITRO.1.P.D.pcm
PWM	ZN768.H12INVITRO.1.P.D.pwm
PFM	ZN768.H12INVITRO.1.P.D.pfm
Alignment	ZN768.H12INVITRO.1.P.D.words.tsv
Threshold to P-value map	ZN768.H12INVITRO.1.P.D.thr
Motif in other formats
JASPAR format	ZN768.H12INVITRO.1.P.D_jaspar_format.txt
MEME format	ZN768.H12INVITRO.1.P.D_meme_format.meme
Transfac format	ZN768.H12INVITRO.1.P.D_transfac_format.txt
Homer format	ZN768.H12INVITRO.1.P.D_homer_format_0.001.txt ZN768.H12INVITRO.1.P.D_homer_format_0.0005.txt ZN768.H12INVITRO.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	73.0	177.0	128.0	408.0
02	289.0	161.0	269.0	67.0
03	590.0	63.0	89.0	44.0
04	56.0	566.0	60.0	104.0
05	31.0	147.0	35.0	573.0
06	42.0	101.0	77.0	566.0
07	113.0	60.0	533.0	80.0
08	27.0	593.0	70.0	96.0
09	17.0	607.0	25.0	137.0
10	45.0	510.0	39.0	192.0
11	545.0	60.0	149.0	32.0
12	622.0	17.0	123.0	24.0
13	171.0	23.0	560.0	32.0
14	70.0	11.0	693.0	12.0
15	57.0	88.0	19.0	622.0
16	20.0	704.0	11.0	51.0
17	719.0	3.0	58.0	6.0
18	5.0	776.0	4.0	1.0
19	758.0	18.0	4.0	6.0
20	6.0	769.0	8.0	3.0
21	779.0	1.0	2.0	4.0
22	4.0	1.0	776.0	5.0
23	3.0	739.0	15.0	29.0

PFM

	A	C	G	T
01	0.093	0.225	0.163	0.519
02	0.368	0.205	0.342	0.085
03	0.751	0.08	0.113	0.056
04	0.071	0.72	0.076	0.132
05	0.039	0.187	0.045	0.729
06	0.053	0.128	0.098	0.72
07	0.144	0.076	0.678	0.102
08	0.034	0.754	0.089	0.122
09	0.022	0.772	0.032	0.174
10	0.057	0.649	0.05	0.244
11	0.693	0.076	0.19	0.041
12	0.791	0.022	0.156	0.031
13	0.218	0.029	0.712	0.041
14	0.089	0.014	0.882	0.015
15	0.073	0.112	0.024	0.791
16	0.025	0.896	0.014	0.065
17	0.915	0.004	0.074	0.008
18	0.006	0.987	0.005	0.001
19	0.964	0.023	0.005	0.008
20	0.008	0.978	0.01	0.004
21	0.991	0.001	0.003	0.005
22	0.005	0.001	0.987	0.006
23	0.004	0.94	0.019	0.037

PWM

	A	C	G	T
01	-0.976	-0.104	-0.424	0.726
02	0.383	-0.197	0.312	-1.06
03	1.094	-1.12	-0.782	-1.468
04	-1.234	1.052	-1.167	-0.629
05	-1.803	-0.287	-1.687	1.065
06	-1.513	-0.658	-0.924	1.052
07	-0.547	-1.167	0.993	-0.886
08	-1.933	1.099	-1.017	-0.708
09	-2.362	1.122	-2.006	-0.357
10	-1.446	0.949	-1.584	-0.023
11	1.015	-1.167	-0.274	-1.773
12	1.147	-2.362	-0.463	-2.044
13	-0.138	-2.084	1.042	-1.773
14	-1.017	-2.75	1.254	-2.674
15	-1.217	-0.793	-2.261	1.147
16	-2.213	1.27	-2.75	-1.325
17	1.291	-3.749	-1.2	-3.252
18	-3.392	1.367	-3.554	-4.308
19	1.344	-2.31	-3.554	-3.252
20	-3.252	1.358	-3.02	-3.749
21	1.371	-4.308	-3.99	-3.554
22	-3.554	-4.308	1.367	-3.392
23	-3.749	1.318	-2.476	-1.866

Standard thresholds

P-value	Threshold
0.001	-2.01474
0.0005	-0.47199
0.0001	2.82336