ZN766.H12INVIVO.1.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN766.H12INVIVO.1.P.B
Gene (human)	ZNF766 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	11
Consensus	RAKAAACCYhh
GC content	39.5%
Information content (bits; total / per base)	13.525 / 1.23
Data sources	ChIP-Seq
Aligned words	553

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (11)	0.784	0.969	0.77	0.941	0.787	0.972	3.428	5.133	181.041	477.432

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.98
HGNC	HGNC:28063
MGI
EntrezGene (human)	GeneID:90321 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN766_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q5HY98 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN766.H12INVIVO.1.P.B.pcm
PWM	ZN766.H12INVIVO.1.P.B.pwm
PFM	ZN766.H12INVIVO.1.P.B.pfm
Alignment	ZN766.H12INVIVO.1.P.B.words.tsv
Threshold to P-value map	ZN766.H12INVIVO.1.P.B.thr
Motif in other formats
JASPAR format	ZN766.H12INVIVO.1.P.B_jaspar_format.txt
MEME format	ZN766.H12INVIVO.1.P.B_meme_format.meme
Transfac format	ZN766.H12INVIVO.1.P.B_transfac_format.txt
Homer format	ZN766.H12INVIVO.1.P.B_homer_format_0.001.txt ZN766.H12INVIVO.1.P.B_homer_format_0.0005.txt ZN766.H12INVIVO.1.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	396.0	23.0	122.0	12.0
02	492.0	6.0	44.0	11.0
03	4.0	2.0	359.0	188.0
04	516.0	36.0	1.0	0.0
05	552.0	0.0	1.0	0.0
06	553.0	0.0	0.0	0.0
07	4.0	546.0	0.0	3.0
08	5.0	543.0	0.0	5.0
09	84.0	167.0	11.0	291.0
10	65.0	303.0	54.0	131.0
11	146.0	128.0	57.0	222.0

PFM

	A	C	G	T
01	0.716	0.042	0.221	0.022
02	0.89	0.011	0.08	0.02
03	0.007	0.004	0.649	0.34
04	0.933	0.065	0.002	0.0
05	0.998	0.0	0.002	0.0
06	1.0	0.0	0.0	0.0
07	0.007	0.987	0.0	0.005
08	0.009	0.982	0.0	0.009
09	0.152	0.302	0.02	0.526
10	0.118	0.548	0.098	0.237
11	0.264	0.231	0.103	0.401

PWM

	A	C	G	T
01	1.045	-1.739	-0.124	-2.332
02	1.261	-2.915	-1.121	-2.408
03	-3.221	-3.665	0.947	0.304
04	1.309	-1.314	-3.993	-4.484
05	1.376	-4.484	-3.993	-4.484
06	1.378	-4.484	-4.484	-4.484
07	-3.221	1.365	-4.484	-3.419
08	-3.057	1.36	-4.484	-3.057
09	-0.491	0.187	-2.408	0.738
10	-0.742	0.779	-0.923	-0.053
11	0.054	-0.076	-0.87	0.469

Standard thresholds

P-value	Threshold
0.001	3.28962
0.0005	4.502575
0.0001	6.9988