ZN766.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN766.H12INVITRO.0.P.D
Gene (human)	ZNF766 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	ddddYhhRWKMAACYYCWWhYhd
GC content	40.23%
Information content (bits; total / per base)	15.107 / 0.657
Data sources	ChIP-Seq
Aligned words	620

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (11)	0.83	0.884	0.804	0.846	0.852	0.896	6.212	7.289	237.06	353.114

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.98
HGNC	HGNC:28063
MGI
EntrezGene (human)	GeneID:90321 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN766_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q5HY98 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN766.H12INVITRO.0.P.D.pcm
PWM	ZN766.H12INVITRO.0.P.D.pwm
PFM	ZN766.H12INVITRO.0.P.D.pfm
Alignment	ZN766.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN766.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN766.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN766.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN766.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN766.H12INVITRO.0.P.D_homer_format_0.001.txt ZN766.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN766.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	140.0	73.0	87.0	320.0
02	156.0	66.0	285.0	113.0
03	316.0	50.0	174.0	80.0
04	173.0	102.0	238.0	107.0
05	85.0	386.0	42.0	107.0
06	158.0	314.0	49.0	99.0
07	356.0	79.0	67.0	118.0
08	406.0	48.0	158.0	8.0
09	451.0	9.0	50.0	110.0
10	14.0	18.0	322.0	266.0
11	454.0	87.0	4.0	75.0
12	523.0	13.0	69.0	15.0
13	592.0	12.0	10.0	6.0
14	6.0	596.0	1.0	17.0
15	13.0	445.0	7.0	155.0
16	14.0	189.0	10.0	407.0
17	10.0	558.0	7.0	45.0
18	206.0	40.0	18.0	356.0
19	80.0	74.0	79.0	387.0
20	104.0	190.0	41.0	285.0
21	88.0	94.0	55.0	383.0
22	72.0	184.0	69.0	295.0
23	110.0	86.0	182.0	242.0

PFM

	A	C	G	T
01	0.226	0.118	0.14	0.516
02	0.252	0.106	0.46	0.182
03	0.51	0.081	0.281	0.129
04	0.279	0.165	0.384	0.173
05	0.137	0.623	0.068	0.173
06	0.255	0.506	0.079	0.16
07	0.574	0.127	0.108	0.19
08	0.655	0.077	0.255	0.013
09	0.727	0.015	0.081	0.177
10	0.023	0.029	0.519	0.429
11	0.732	0.14	0.006	0.121
12	0.844	0.021	0.111	0.024
13	0.955	0.019	0.016	0.01
14	0.01	0.961	0.002	0.027
15	0.021	0.718	0.011	0.25
16	0.023	0.305	0.016	0.656
17	0.016	0.9	0.011	0.073
18	0.332	0.065	0.029	0.574
19	0.129	0.119	0.127	0.624
20	0.168	0.306	0.066	0.46
21	0.142	0.152	0.089	0.618
22	0.116	0.297	0.111	0.476
23	0.177	0.139	0.294	0.39

PWM

	A	C	G	T
01	-0.101	-0.742	-0.57	0.72
02	0.006	-0.84	0.604	-0.312
03	0.707	-1.11	0.115	-0.652
04	0.109	-0.413	0.425	-0.366
05	-0.592	0.906	-1.279	-0.366
06	0.019	0.701	-1.13	-0.443
07	0.826	-0.664	-0.825	-0.27
08	0.957	-1.15	0.019	-2.791
09	1.061	-2.692	-1.11	-0.339
10	-2.306	-2.078	0.726	0.536
11	1.068	-0.57	-3.33	-0.715
12	1.209	-2.372	-0.797	-2.244
13	1.332	-2.443	-2.602	-3.025
14	-3.025	1.339	-4.095	-2.13
15	-2.372	1.048	-2.901	0.0
16	-2.306	0.196	-2.602	0.959
17	-2.602	1.273	-2.901	-1.212
18	0.282	-1.325	-2.078	0.826
19	-0.652	-0.728	-0.664	0.909
20	-0.394	0.202	-1.302	0.604
21	-0.558	-0.493	-1.018	0.898
22	-0.755	0.17	-0.797	0.639
23	-0.339	-0.581	0.159	0.442

Standard thresholds

P-value	Threshold
0.001	3.30411
0.0005	4.37401
0.0001	6.62206