ZN765.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN765.H12RSNP.0.P.D
Gene (human)	ZNF765 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	RRSSCWGKKCMYRGCCMAKRRWR
GC content	65.08%
Information content (bits; total / per base)	21.05 / 0.915
Data sources	ChIP-Seq
Aligned words	291

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.964	0.97	0.95	0.959	0.959	0.967	7.312	7.341	622.913	629.824

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF525-like {2.3.3.27} (TFClass)
TFClass ID	TFClass: 2.3.3.27.3
HGNC	HGNC:25092
MGI
EntrezGene (human)	GeneID:91661 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN765_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q7L2R6 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN765.H12RSNP.0.P.D.pcm
PWM	ZN765.H12RSNP.0.P.D.pwm
PFM	ZN765.H12RSNP.0.P.D.pfm
Alignment	ZN765.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN765.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN765.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN765.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN765.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN765.H12RSNP.0.P.D_homer_format_0.001.txt ZN765.H12RSNP.0.P.D_homer_format_0.0005.txt ZN765.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	37.0	22.0	198.0	34.0
02	44.0	13.0	205.0	29.0
03	19.0	151.0	100.0	21.0
04	12.0	203.0	45.0	31.0
05	13.0	257.0	14.0	7.0
06	82.0	18.0	14.0	177.0
07	4.0	9.0	264.0	14.0
08	6.0	13.0	208.0	64.0
09	25.0	10.0	226.0	30.0
10	4.0	277.0	4.0	6.0
11	42.0	196.0	28.0	25.0
12	8.0	35.0	26.0	222.0
13	156.0	10.0	105.0	20.0
14	14.0	12.0	253.0	12.0
15	2.0	286.0	2.0	1.0
16	6.0	263.0	6.0	16.0
17	27.0	216.0	26.0	22.0
18	261.0	13.0	9.0	8.0
19	26.0	20.0	173.0	72.0
20	29.0	18.0	216.0	28.0
21	224.0	16.0	38.0	13.0
22	203.0	30.0	24.0	34.0
23	179.0	29.0	55.0	28.0

PFM

	A	C	G	T
01	0.127	0.076	0.68	0.117
02	0.151	0.045	0.704	0.1
03	0.065	0.519	0.344	0.072
04	0.041	0.698	0.155	0.107
05	0.045	0.883	0.048	0.024
06	0.282	0.062	0.048	0.608
07	0.014	0.031	0.907	0.048
08	0.021	0.045	0.715	0.22
09	0.086	0.034	0.777	0.103
10	0.014	0.952	0.014	0.021
11	0.144	0.674	0.096	0.086
12	0.027	0.12	0.089	0.763
13	0.536	0.034	0.361	0.069
14	0.048	0.041	0.869	0.041
15	0.007	0.983	0.007	0.003
16	0.021	0.904	0.021	0.055
17	0.093	0.742	0.089	0.076
18	0.897	0.045	0.031	0.027
19	0.089	0.069	0.595	0.247
20	0.1	0.062	0.742	0.096
21	0.77	0.055	0.131	0.045
22	0.698	0.103	0.082	0.117
23	0.615	0.1	0.189	0.096

PWM

	A	C	G	T
01	-0.658	-1.153	0.989	-0.739
02	-0.49	-1.638	1.024	-0.891
03	-1.29	0.72	0.313	-1.196
04	-1.71	1.014	-0.469	-0.828
05	-1.638	1.248	-1.571	-2.176
06	0.118	-1.34	-1.571	0.878
07	-2.617	-1.963	1.275	-1.571
08	-2.302	-1.638	1.038	-0.126
09	-1.032	-1.871	1.12	-0.859
10	-2.617	1.323	-2.617	-2.302
11	-0.535	0.979	-0.925	-1.032
12	-2.064	-0.711	-0.995	1.103
13	0.753	-1.871	0.361	-1.242
14	-1.571	-1.71	1.233	-1.71
15	-3.077	1.355	-3.077	-3.423
16	-2.302	1.271	-2.302	-1.449
17	-0.959	1.075	-0.995	-1.153
18	1.264	-1.638	-1.963	-2.064
19	-0.995	-1.242	0.855	-0.01
20	-0.891	-1.34	1.075	-0.925
21	1.112	-1.449	-0.632	-1.638
22	1.014	-0.859	-1.071	-0.739
23	0.889	-0.891	-0.274	-0.925

Standard thresholds

P-value	Threshold
0.001	1.44186
0.0005	2.65216
0.0001	5.24566