ZN75D.H12RSNP.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN75D.H12RSNP.1.P.D
Gene (human)	ZNF75D (GeneCards)
Gene synonyms (human)	ZNF75, ZNF82
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	25
Consensus	TGYRRdSARTGTGGGAAAKCCTTCM
GC content	45.02%
Information content (bits; total / per base)	33.705 / 1.348
Data sources	ChIP-Seq
Aligned words	592

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (8)	0.768	0.81	0.565	0.604	0.938	0.951	10.562	12.746	132.848	147.032

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF75-like {2.3.3.6} (TFClass)
TFClass ID	TFClass: 2.3.3.6.3
HGNC	HGNC:13145
MGI
EntrezGene (human)	GeneID:7626 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN75D_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P51815 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN75D.H12RSNP.1.P.D.pcm
PWM	ZN75D.H12RSNP.1.P.D.pwm
PFM	ZN75D.H12RSNP.1.P.D.pfm
Alignment	ZN75D.H12RSNP.1.P.D.words.tsv
Threshold to P-value map	ZN75D.H12RSNP.1.P.D.thr
Motif in other formats
JASPAR format	ZN75D.H12RSNP.1.P.D_jaspar_format.txt
MEME format	ZN75D.H12RSNP.1.P.D_meme_format.meme
Transfac format	ZN75D.H12RSNP.1.P.D_transfac_format.txt
Homer format	ZN75D.H12RSNP.1.P.D_homer_format_0.001.txt ZN75D.H12RSNP.1.P.D_homer_format_0.0005.txt ZN75D.H12RSNP.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	13.0	11.0	7.0	561.0
02	15.0	10.0	556.0	11.0
03	8.0	177.0	16.0	391.0
04	428.0	56.0	89.0	19.0
05	347.0	43.0	173.0	29.0
06	81.0	66.0	188.0	257.0
07	47.0	109.0	412.0	24.0
08	510.0	14.0	16.0	52.0
09	370.0	48.0	149.0	25.0
10	3.0	1.0	9.0	579.0
11	0.0	0.0	592.0	0.0
12	1.0	7.0	0.0	584.0
13	2.0	0.0	590.0	0.0
14	7.0	0.0	579.0	6.0
15	48.0	0.0	540.0	4.0
16	592.0	0.0	0.0	0.0
17	576.0	0.0	16.0	0.0
18	554.0	0.0	37.0	1.0
19	32.0	16.0	450.0	94.0
20	5.0	531.0	35.0	21.0
21	21.0	551.0	3.0	17.0
22	1.0	4.0	0.0	587.0
23	16.0	18.0	4.0	554.0
24	2.0	430.0	2.0	158.0
25	411.0	74.0	34.0	73.0

PFM

	A	C	G	T
01	0.022	0.019	0.012	0.948
02	0.025	0.017	0.939	0.019
03	0.014	0.299	0.027	0.66
04	0.723	0.095	0.15	0.032
05	0.586	0.073	0.292	0.049
06	0.137	0.111	0.318	0.434
07	0.079	0.184	0.696	0.041
08	0.861	0.024	0.027	0.088
09	0.625	0.081	0.252	0.042
10	0.005	0.002	0.015	0.978
11	0.0	0.0	1.0	0.0
12	0.002	0.012	0.0	0.986
13	0.003	0.0	0.997	0.0
14	0.012	0.0	0.978	0.01
15	0.081	0.0	0.912	0.007
16	1.0	0.0	0.0	0.0
17	0.973	0.0	0.027	0.0
18	0.936	0.0	0.063	0.002
19	0.054	0.027	0.76	0.159
20	0.008	0.897	0.059	0.035
21	0.035	0.931	0.005	0.029
22	0.002	0.007	0.0	0.992
23	0.027	0.03	0.007	0.936
24	0.003	0.726	0.003	0.267
25	0.694	0.125	0.057	0.123

PWM

	A	C	G	T
01	-2.327	-2.475	-2.857	1.325
02	-2.199	-2.557	1.316	-2.475
03	-2.747	0.177	-2.14	0.965
04	1.055	-0.954	-0.502	-1.983
05	0.846	-1.21	0.155	-1.587
06	-0.594	-0.794	0.237	0.547
07	-1.124	-0.302	1.017	-1.766
08	1.23	-2.261	-2.14	-1.026
09	0.91	-1.104	0.007	-1.727
10	-3.483	-4.054	-2.647	1.356
11	-4.541	-4.541	1.378	-4.541
12	-4.054	-2.857	-4.541	1.365
13	-3.728	-4.541	1.375	-4.541
14	-2.857	-4.541	1.356	-2.98
15	-1.104	-4.541	1.287	-3.286
16	1.378	-4.541	-4.541	-4.541
17	1.351	-4.541	-2.14	-4.541
18	1.312	-4.541	-1.355	-4.054
19	-1.494	-2.14	1.105	-0.448
20	-3.121	1.27	-1.408	-1.89
21	-1.89	1.307	-3.483	-2.085
22	-4.054	-3.286	-4.541	1.37
23	-2.14	-2.033	-3.286	1.312
24	-3.728	1.06	-3.728	0.065
25	1.015	-0.683	-1.436	-0.696

Standard thresholds

P-value	Threshold
0.001	-9.27939
0.0005	-7.29674
0.0001	-3.04189