ZN75D.H12CORE.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN75D.H12CORE.0.P.B
Gene (human)	ZNF75D (GeneCards)
Gene synonyms (human)	ZNF75, ZNF82
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	17
Consensus	dGTGGGAAAbYCYYMYb
GC content	57.52%
Information content (bits; total / per base)	19.231 / 1.131
Data sources	ChIP-Seq
Aligned words	385

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (8)	0.91	0.96	0.808	0.896	0.995	0.996	7.827	7.94	345.275	369.456

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF75-like {2.3.3.6} (TFClass)
TFClass ID	TFClass: 2.3.3.6.3
HGNC	HGNC:13145
MGI
EntrezGene (human)	GeneID:7626 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN75D_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P51815 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN75D.H12CORE.0.P.B.pcm
PWM	ZN75D.H12CORE.0.P.B.pwm
PFM	ZN75D.H12CORE.0.P.B.pfm
Alignment	ZN75D.H12CORE.0.P.B.words.tsv
Threshold to P-value map	ZN75D.H12CORE.0.P.B.thr
Motif in other formats
JASPAR format	ZN75D.H12CORE.0.P.B_jaspar_format.txt
MEME format	ZN75D.H12CORE.0.P.B_meme_format.meme
Transfac format	ZN75D.H12CORE.0.P.B_transfac_format.txt
Homer format	ZN75D.H12CORE.0.P.B_homer_format_0.001.txt ZN75D.H12CORE.0.P.B_homer_format_0.0005.txt ZN75D.H12CORE.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	60.0	34.0	94.0	197.0
02	0.0	0.0	385.0	0.0
03	9.0	2.0	2.0	372.0
04	0.0	0.0	385.0	0.0
05	5.0	0.0	326.0	54.0
06	9.0	0.0	376.0	0.0
07	385.0	0.0	0.0	0.0
08	318.0	24.0	35.0	8.0
09	379.0	0.0	4.0	2.0
10	11.0	137.0	125.0	112.0
11	10.0	255.0	53.0	67.0
12	17.0	363.0	2.0	3.0
13	16.0	134.0	7.0	228.0
14	20.0	215.0	39.0	111.0
15	67.0	274.0	24.0	20.0
16	28.0	219.0	26.0	112.0
17	56.0	163.0	62.0	104.0

PFM

	A	C	G	T
01	0.156	0.088	0.244	0.512
02	0.0	0.0	1.0	0.0
03	0.023	0.005	0.005	0.966
04	0.0	0.0	1.0	0.0
05	0.013	0.0	0.847	0.14
06	0.023	0.0	0.977	0.0
07	1.0	0.0	0.0	0.0
08	0.826	0.062	0.091	0.021
09	0.984	0.0	0.01	0.005
10	0.029	0.356	0.325	0.291
11	0.026	0.662	0.138	0.174
12	0.044	0.943	0.005	0.008
13	0.042	0.348	0.018	0.592
14	0.052	0.558	0.101	0.288
15	0.174	0.712	0.062	0.052
16	0.073	0.569	0.068	0.291
17	0.145	0.423	0.161	0.27

PWM

	A	C	G	T
01	-0.463	-1.013	-0.023	0.708
02	-4.185	-4.185	1.375	-4.185
03	-2.232	-3.333	-3.333	1.341
04	-4.185	-4.185	1.375	-4.185
05	-2.712	-4.185	1.209	-0.566
06	-2.232	-4.185	1.351	-4.185
07	1.375	-4.185	-4.185	-4.185
08	1.184	-1.344	-0.985	-2.332
09	1.359	-4.185	-2.88	-3.333
10	-2.058	0.348	0.258	0.149
11	-2.141	0.965	-0.584	-0.356
12	-1.665	1.316	-3.333	-3.081
13	-1.721	0.327	-2.444	0.854
14	-1.515	0.795	-0.881	0.141
15	-0.356	1.036	-1.344	-1.515
16	-1.198	0.814	-1.269	0.149
17	-0.531	0.521	-0.431	0.076

Standard thresholds

P-value	Threshold
0.001	0.59211
0.0005	2.04006
0.0001	5.09191