ZN749.H12INVIVO.1.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN749.H12INVIVO.1.P.C
Gene (human)	ZNF749 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	C

Motif length	9
Consensus	RCCCCARCY
GC content	67.66%
Information content (bits; total / per base)	11.346 / 1.261
Data sources	ChIP-Seq
Aligned words	67

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.822	0.859	0.669	0.678	0.784	0.853	2.608	2.919	32.926	35.174

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.217
HGNC	HGNC:32783
MGI
EntrezGene (human)	GeneID:388567 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN749_HUMAN
UniProt ID (mouse)
UniProt AC (human)	O43361 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN749.H12INVIVO.1.P.C.pcm
PWM	ZN749.H12INVIVO.1.P.C.pwm
PFM	ZN749.H12INVIVO.1.P.C.pfm
Alignment	ZN749.H12INVIVO.1.P.C.words.tsv
Threshold to P-value map	ZN749.H12INVIVO.1.P.C.thr
Motif in other formats
JASPAR format	ZN749.H12INVIVO.1.P.C_jaspar_format.txt
MEME format	ZN749.H12INVIVO.1.P.C_meme_format.meme
Transfac format	ZN749.H12INVIVO.1.P.C_transfac_format.txt
Homer format	ZN749.H12INVIVO.1.P.C_homer_format_0.001.txt ZN749.H12INVIVO.1.P.C_homer_format_0.0005.txt ZN749.H12INVIVO.1.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	38.0	5.0	16.0	8.0
02	0.0	66.0	0.0	1.0
03	5.0	56.0	1.0	5.0
04	1.0	66.0	0.0	0.0
05	1.0	63.0	1.0	2.0
06	66.0	1.0	0.0	0.0
07	49.0	5.0	9.0	4.0
08	0.0	40.0	27.0	0.0
09	5.0	49.0	3.0	10.0

PFM

	A	C	G	T
01	0.567	0.075	0.239	0.119
02	0.0	0.985	0.0	0.015
03	0.075	0.836	0.015	0.075
04	0.015	0.985	0.0	0.0
05	0.015	0.94	0.015	0.03
06	0.985	0.015	0.0	0.0
07	0.731	0.075	0.134	0.06
08	0.0	0.597	0.403	0.0
09	0.075	0.731	0.045	0.149

PWM

	A	C	G	T
01	0.786	-1.079	-0.043	-0.676
02	-2.829	1.326	-2.829	-2.161
03	-1.079	1.165	-2.161	-1.079
04	-2.161	1.326	-2.829	-2.829
05	-2.161	1.28	-2.161	-1.764
06	1.326	-2.161	-2.829	-2.829
07	1.034	-1.079	-0.572	-1.26
08	-2.829	0.836	0.455	-2.829
09	-1.079	1.034	-1.48	-0.477

Standard thresholds

P-value	Threshold
0.001	4.73273
0.0005	5.576105
0.0001	7.26664