ZN749.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN749.H12INVITRO.0.P.D
Gene (human)	ZNF749 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	25
Consensus	YnbSnCYdMCCYCARCMYbvYbhbn
GC content	59.53%
Information content (bits; total / per base)	16.649 / 0.666
Data sources	ChIP-Seq
Aligned words	76

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.855	0.899	0.755	0.777	0.913	0.973	5.298	5.94	36.313	42.523

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.217
HGNC	HGNC:32783
MGI
EntrezGene (human)	GeneID:388567 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN749_HUMAN
UniProt ID (mouse)
UniProt AC (human)	O43361 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN749.H12INVITRO.0.P.D.pcm
PWM	ZN749.H12INVITRO.0.P.D.pwm
PFM	ZN749.H12INVITRO.0.P.D.pfm
Alignment	ZN749.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN749.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN749.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN749.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN749.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN749.H12INVITRO.0.P.D_homer_format_0.001.txt ZN749.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN749.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	3.0	38.0	8.0	27.0
02	23.0	19.0	23.0	11.0
03	8.0	32.0	12.0	24.0
04	5.0	46.0	16.0	9.0
05	22.0	28.0	12.0	14.0
06	2.0	70.0	3.0	1.0
07	6.0	31.0	0.0	39.0
08	29.0	6.0	32.0	9.0
09	46.0	25.0	3.0	2.0
10	1.0	71.0	4.0	0.0
11	2.0	66.0	3.0	5.0
12	4.0	48.0	3.0	21.0
13	2.0	73.0	0.0	1.0
14	72.0	3.0	1.0	0.0
15	43.0	5.0	27.0	1.0
16	1.0	64.0	10.0	1.0
17	26.0	44.0	1.0	5.0
18	6.0	18.0	0.0	52.0
19	5.0	19.0	10.0	42.0
20	10.0	43.0	15.0	8.0
21	11.0	46.0	7.0	12.0
22	6.0	25.0	10.0	35.0
23	15.0	21.0	8.0	32.0
24	9.0	37.0	12.0	18.0
25	12.0	21.0	12.0	31.0

PFM

	A	C	G	T
01	0.039	0.5	0.105	0.355
02	0.303	0.25	0.303	0.145
03	0.105	0.421	0.158	0.316
04	0.066	0.605	0.211	0.118
05	0.289	0.368	0.158	0.184
06	0.026	0.921	0.039	0.013
07	0.079	0.408	0.0	0.513
08	0.382	0.079	0.421	0.118
09	0.605	0.329	0.039	0.026
10	0.013	0.934	0.053	0.0
11	0.026	0.868	0.039	0.066
12	0.053	0.632	0.039	0.276
13	0.026	0.961	0.0	0.013
14	0.947	0.039	0.013	0.0
15	0.566	0.066	0.355	0.013
16	0.013	0.842	0.132	0.013
17	0.342	0.579	0.013	0.066
18	0.079	0.237	0.0	0.684
19	0.066	0.25	0.132	0.553
20	0.132	0.566	0.197	0.105
21	0.145	0.605	0.092	0.158
22	0.079	0.329	0.132	0.461
23	0.197	0.276	0.105	0.421
24	0.118	0.487	0.158	0.237
25	0.158	0.276	0.158	0.408

PWM

	A	C	G	T
01	-1.593	0.666	-0.793	0.335
02	0.182	0.0	0.182	-0.508
03	-0.793	0.499	-0.429	0.222
04	-1.194	0.852	-0.162	-0.689
05	0.139	0.37	-0.429	-0.286
06	-1.874	1.264	-1.593	-2.266
07	-1.042	0.468	-2.92	0.691
08	0.404	-1.042	0.499	-0.689
09	0.852	0.261	-1.593	-1.874
10	-2.266	1.278	-1.374	-2.92
11	-1.874	1.206	-1.593	-1.194
12	-1.374	0.894	-1.593	0.095
13	-1.874	1.305	-2.92	-2.266
14	1.292	-1.593	-2.266	-2.92
15	0.786	-1.194	0.335	-2.266
16	-2.266	1.176	-0.594	-2.266
17	0.299	0.809	-2.266	-1.194
18	-1.042	-0.051	-2.92	0.972
19	-1.194	0.0	-0.594	0.763
20	-0.594	0.786	-0.222	-0.793
21	-0.508	0.852	-0.91	-0.429
22	-1.042	0.261	-0.594	0.586
23	-0.222	0.095	-0.793	0.499
24	-0.689	0.64	-0.429	-0.051
25	-0.429	0.095	-0.429	0.468

Standard thresholds

P-value	Threshold
0.001	3.43511
0.0005	4.46451
0.0001	6.64371