ZN736.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN736.H12RSNP.0.P.D
Gene (human)	ZNF736 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	GCCCATAAAARCCCYRGRCTCAG
GC content	53.47%
Information content (bits; total / per base)	34.039 / 1.48
Data sources	ChIP-Seq
Aligned words	970

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.995	0.996	0.994	0.995	0.994	0.995	17.998	18.092	803.078	1027.071

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF736-like {2.3.3.48} (TFClass)
TFClass ID	TFClass: 2.3.3.48.1
HGNC	HGNC:32467
MGI
EntrezGene (human)	GeneID:728927 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN736_HUMAN
UniProt ID (mouse)
UniProt AC (human)	B4DX44 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN736.H12RSNP.0.P.D.pcm
PWM	ZN736.H12RSNP.0.P.D.pwm
PFM	ZN736.H12RSNP.0.P.D.pfm
Alignment	ZN736.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN736.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN736.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN736.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN736.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN736.H12RSNP.0.P.D_homer_format_0.001.txt ZN736.H12RSNP.0.P.D_homer_format_0.0005.txt ZN736.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	15.0	22.0	929.0	4.0
02	12.0	812.0	22.0	124.0
03	42.0	863.0	6.0	59.0
04	31.0	784.0	2.0	153.0
05	913.0	16.0	19.0	22.0
06	32.0	6.0	4.0	928.0
07	956.0	0.0	3.0	11.0
08	969.0	1.0	0.0	0.0
09	967.0	0.0	1.0	2.0
10	838.0	9.0	93.0	30.0
11	489.0	54.0	392.0	35.0
12	6.0	923.0	9.0	32.0
13	13.0	925.0	0.0	32.0
14	15.0	887.0	2.0	66.0
15	33.0	609.0	9.0	319.0
16	598.0	16.0	346.0	10.0
17	23.0	7.0	921.0	19.0
18	676.0	13.0	269.0	12.0
19	14.0	933.0	5.0	18.0
20	5.0	101.0	2.0	862.0
21	1.0	952.0	9.0	8.0
22	945.0	4.0	10.0	11.0
23	23.0	7.0	933.0	7.0

PFM

	A	C	G	T
01	0.015	0.023	0.958	0.004
02	0.012	0.837	0.023	0.128
03	0.043	0.89	0.006	0.061
04	0.032	0.808	0.002	0.158
05	0.941	0.016	0.02	0.023
06	0.033	0.006	0.004	0.957
07	0.986	0.0	0.003	0.011
08	0.999	0.001	0.0	0.0
09	0.997	0.0	0.001	0.002
10	0.864	0.009	0.096	0.031
11	0.504	0.056	0.404	0.036
12	0.006	0.952	0.009	0.033
13	0.013	0.954	0.0	0.033
14	0.015	0.914	0.002	0.068
15	0.034	0.628	0.009	0.329
16	0.616	0.016	0.357	0.01
17	0.024	0.007	0.949	0.02
18	0.697	0.013	0.277	0.012
19	0.014	0.962	0.005	0.019
20	0.005	0.104	0.002	0.889
21	0.001	0.981	0.009	0.008
22	0.974	0.004	0.01	0.011
23	0.024	0.007	0.962	0.007

PWM

	A	C	G	T
01	-2.682	-2.332	1.338	-3.754
02	-2.879	1.204	-2.332	-0.664
03	-1.72	1.264	-3.454	-1.392
04	-2.01	1.169	-4.185	-0.456
05	1.321	-2.623	-2.467	-2.332
06	-1.98	-3.454	-3.754	1.337
07	1.366	-4.956	-3.946	-2.955
08	1.38	-4.498	-4.956	-4.956
09	1.378	-4.956	-4.498	-4.185
10	1.235	-3.126	-0.947	-2.041
11	0.698	-1.478	0.478	-1.895
12	-3.454	1.331	-3.126	-1.98
13	-2.809	1.334	-4.956	-1.98
14	-2.682	1.292	-4.185	-1.283
15	-1.951	0.917	-3.126	0.272
16	0.898	-2.623	0.353	-3.037
17	-2.29	-3.333	1.329	-2.467
18	1.021	-2.809	0.103	-2.879
19	-2.743	1.342	-3.593	-2.516
20	-3.593	-0.866	-4.185	1.263
21	-4.498	1.362	-3.126	-3.224
22	1.355	-3.754	-3.037	-2.955
23	-2.29	-3.333	1.342	-3.333

Standard thresholds

P-value	Threshold
0.001	-9.92044
0.0005	-7.91954
0.0001	-3.62239