ZN730.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN730.H12INVITRO.0.P.D
Gene (human)	ZNF730 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	15
Consensus	RhMdYRGChKCCYvh
GC content	57.62%
Information content (bits; total / per base)	10.939 / 0.729
Data sources	ChIP-Seq
Aligned words	976

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.758	0.758	0.631	0.633	0.771	0.776	3.679	3.711	150.534	171.041

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF100-like {2.3.3.59} (TFClass)
TFClass ID	TFClass: 2.3.3.59.4
HGNC	HGNC:32470
MGI
EntrezGene (human)	GeneID:100129543 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN730_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6ZMV8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN730.H12INVITRO.0.P.D.pcm
PWM	ZN730.H12INVITRO.0.P.D.pwm
PFM	ZN730.H12INVITRO.0.P.D.pfm
Alignment	ZN730.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN730.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN730.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN730.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN730.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN730.H12INVITRO.0.P.D_homer_format_0.001.txt ZN730.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN730.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	131.0	31.0	763.0	51.0
02	200.0	450.0	153.0	173.0
03	314.0	537.0	21.0	104.0
04	428.0	53.0	232.0	263.0
05	39.0	170.0	54.0	713.0
06	700.0	16.0	217.0	43.0
07	17.0	33.0	884.0	42.0
08	27.0	899.0	24.0	26.0
09	423.0	212.0	111.0	230.0
10	27.0	56.0	436.0	457.0
11	69.0	849.0	24.0	34.0
12	39.0	786.0	17.0	134.0
13	75.0	744.0	28.0	129.0
14	507.0	176.0	154.0	139.0
15	528.0	175.0	131.0	142.0

PFM

	A	C	G	T
01	0.134	0.032	0.782	0.052
02	0.205	0.461	0.157	0.177
03	0.322	0.55	0.022	0.107
04	0.439	0.054	0.238	0.269
05	0.04	0.174	0.055	0.731
06	0.717	0.016	0.222	0.044
07	0.017	0.034	0.906	0.043
08	0.028	0.921	0.025	0.027
09	0.433	0.217	0.114	0.236
10	0.028	0.057	0.447	0.468
11	0.071	0.87	0.025	0.035
12	0.04	0.805	0.017	0.137
13	0.077	0.762	0.029	0.132
14	0.519	0.18	0.158	0.142
15	0.541	0.179	0.134	0.145

PWM

	A	C	G	T
01	-0.616	-2.016	1.135	-1.539
02	-0.197	0.609	-0.463	-0.341
03	0.251	0.785	-2.381	-0.843
04	0.559	-1.502	-0.05	0.074
05	-1.797	-0.358	-1.484	1.068
06	1.049	-2.629	-0.116	-1.704
07	-2.575	-1.957	1.282	-1.726
08	-2.147	1.299	-2.257	-2.182
09	0.547	-0.14	-0.779	-0.059
10	-2.147	-1.449	0.577	0.624
11	-1.245	1.242	-2.257	-1.928
12	-1.797	1.165	-2.575	-0.594
13	-1.164	1.11	-2.112	-0.631
14	0.728	-0.324	-0.456	-0.557
15	0.768	-0.33	-0.616	-0.536

Standard thresholds

P-value	Threshold
0.001	4.49246
0.0005	5.34671
0.0001	7.13721