ZN716.H12INVIVO.1.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN716.H12INVIVO.1.P.C
Gene (human)	ZNF716 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	C

Motif length	11
Consensus	dSWRGAAAKWb
GC content	40.97%
Information content (bits; total / per base)	10.108 / 0.919
Data sources	ChIP-Seq
Aligned words	1013

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.71	0.717	0.642	0.644	0.737	0.742	2.645	2.667	82.527	94.921

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF479-like {2.3.3.57} (TFClass)
TFClass ID	TFClass: 2.3.3.57.2
HGNC	HGNC:32458
MGI
EntrezGene (human)	GeneID:441234 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN716_HUMAN
UniProt ID (mouse)
UniProt AC (human)	A6NP11 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN716.H12INVIVO.1.P.C.pcm
PWM	ZN716.H12INVIVO.1.P.C.pwm
PFM	ZN716.H12INVIVO.1.P.C.pfm
Alignment	ZN716.H12INVIVO.1.P.C.words.tsv
Threshold to P-value map	ZN716.H12INVIVO.1.P.C.thr
Motif in other formats
JASPAR format	ZN716.H12INVIVO.1.P.C_jaspar_format.txt
MEME format	ZN716.H12INVIVO.1.P.C_meme_format.meme
Transfac format	ZN716.H12INVIVO.1.P.C_transfac_format.txt
Homer format	ZN716.H12INVIVO.1.P.C_homer_format_0.001.txt ZN716.H12INVIVO.1.P.C_homer_format_0.0005.txt ZN716.H12INVIVO.1.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	282.0	69.0	502.0	160.0
02	75.0	750.0	124.0	64.0
03	776.0	18.0	61.0	158.0
04	280.0	1.0	692.0	40.0
05	19.0	8.0	968.0	18.0
06	880.0	51.0	80.0	2.0
07	899.0	61.0	41.0	12.0
08	909.0	17.0	30.0	57.0
09	80.0	48.0	319.0	566.0
10	754.0	35.0	94.0	130.0
11	99.0	196.0	400.0	318.0

PFM

	A	C	G	T
01	0.278	0.068	0.496	0.158
02	0.074	0.74	0.122	0.063
03	0.766	0.018	0.06	0.156
04	0.276	0.001	0.683	0.039
05	0.019	0.008	0.956	0.018
06	0.869	0.05	0.079	0.002
07	0.887	0.06	0.04	0.012
08	0.897	0.017	0.03	0.056
09	0.079	0.047	0.315	0.559
10	0.744	0.035	0.093	0.128
11	0.098	0.193	0.395	0.314

PWM

	A	C	G	T
01	0.107	-1.282	0.681	-0.455
02	-1.201	1.081	-0.707	-1.356
03	1.115	-2.559	-1.402	-0.468
04	0.1	-4.537	1.001	-1.81
05	-2.51	-3.266	1.336	-2.559
06	1.241	-1.576	-1.138	-4.225
07	1.262	-1.402	-1.786	-2.922
08	1.273	-2.611	-2.084	-1.468
09	-1.138	-1.635	0.229	0.8
10	1.086	-1.938	-0.98	-0.66
11	-0.929	-0.254	0.455	0.226

Standard thresholds

P-value	Threshold
0.001	4.695165
0.0005	5.52132
0.0001	7.232675