ZN716.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN716.H12INVITRO.0.P.D
Gene (human)	ZNF716 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	25
Consensus	ddShdRvMWdWdnRRnMWKASdvdd
GC content	39.51%
Information content (bits; total / per base)	12.295 / 0.492
Data sources	ChIP-Seq
Aligned words	1012

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.788	0.798	0.72	0.733	0.836	0.852	3.738	3.89	200.96	236.658

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF479-like {2.3.3.57} (TFClass)
TFClass ID	TFClass: 2.3.3.57.2
HGNC	HGNC:32458
MGI
EntrezGene (human)	GeneID:441234 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN716_HUMAN
UniProt ID (mouse)
UniProt AC (human)	A6NP11 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN716.H12INVITRO.0.P.D.pcm
PWM	ZN716.H12INVITRO.0.P.D.pwm
PFM	ZN716.H12INVITRO.0.P.D.pfm
Alignment	ZN716.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN716.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN716.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN716.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN716.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN716.H12INVITRO.0.P.D_homer_format_0.001.txt ZN716.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN716.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	316.0	90.0	336.0	270.0
02	246.0	90.0	521.0	155.0
03	145.0	616.0	151.0	100.0
04	592.0	160.0	123.0	137.0
05	357.0	42.0	473.0	140.0
06	155.0	37.0	756.0	64.0
07	529.0	160.0	275.0	48.0
08	763.0	194.0	13.0	42.0
09	751.0	83.0	70.0	108.0
10	187.0	51.0	204.0	570.0
11	583.0	35.0	119.0	275.0
12	152.0	139.0	363.0	358.0
13	242.0	253.0	310.0	207.0
14	695.0	54.0	197.0	66.0
15	606.0	12.0	362.0	32.0
16	262.0	257.0	219.0	274.0
17	351.0	567.0	37.0	57.0
18	168.0	77.0	69.0	698.0
19	53.0	23.0	171.0	765.0
20	930.0	27.0	19.0	36.0
21	59.0	532.0	371.0	50.0
22	389.0	73.0	94.0	456.0
23	557.0	120.0	246.0	89.0
24	482.0	109.0	168.0	253.0
25	257.0	109.0	420.0	226.0

PFM

	A	C	G	T
01	0.312	0.089	0.332	0.267
02	0.243	0.089	0.515	0.153
03	0.143	0.609	0.149	0.099
04	0.585	0.158	0.122	0.135
05	0.353	0.042	0.467	0.138
06	0.153	0.037	0.747	0.063
07	0.523	0.158	0.272	0.047
08	0.754	0.192	0.013	0.042
09	0.742	0.082	0.069	0.107
10	0.185	0.05	0.202	0.563
11	0.576	0.035	0.118	0.272
12	0.15	0.137	0.359	0.354
13	0.239	0.25	0.306	0.205
14	0.687	0.053	0.195	0.065
15	0.599	0.012	0.358	0.032
16	0.259	0.254	0.216	0.271
17	0.347	0.56	0.037	0.056
18	0.166	0.076	0.068	0.69
19	0.052	0.023	0.169	0.756
20	0.919	0.027	0.019	0.036
21	0.058	0.526	0.367	0.049
22	0.384	0.072	0.093	0.451
23	0.55	0.119	0.243	0.088
24	0.476	0.108	0.166	0.25
25	0.254	0.108	0.415	0.223

PWM

	A	C	G	T
01	0.221	-1.021	0.282	0.065
02	-0.028	-1.021	0.719	-0.486
03	-0.552	0.886	-0.512	-0.918
04	0.846	-0.454	-0.714	-0.608
05	0.342	-1.762	0.623	-0.586
06	-0.486	-1.884	1.09	-1.355
07	0.734	-0.454	0.083	-1.634
08	1.099	-0.263	-2.85	-1.762
09	1.084	-1.101	-1.267	-0.842
10	-0.3	-1.575	-0.214	0.808
11	0.831	-1.937	-0.747	0.083
12	-0.505	-0.593	0.359	0.345
13	-0.044	0.0	0.202	-0.199
14	1.006	-1.52	-0.248	-1.325
15	0.87	-2.921	0.356	-2.022
16	0.035	0.016	-0.143	0.079
17	0.325	0.803	-1.884	-1.467
18	-0.406	-1.174	-1.281	1.01
19	-1.538	-2.332	-0.388	1.102
20	1.297	-2.182	-2.509	-1.91
21	-1.434	0.74	0.381	-1.594
22	0.428	-1.226	-0.979	0.586
23	0.785	-0.738	-0.028	-1.032
24	0.641	-0.833	-0.406	0.0
25	0.016	-0.833	0.504	-0.112

Standard thresholds

P-value	Threshold
0.001	4.21436
0.0005	5.10366
0.0001	6.98261