ZN714.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN714.H12INVITRO.0.P.D
Gene (human)	ZNF714 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	18
Consensus	bbbdbMvKTSCTGCTnvh
GC content	60.6%
Information content (bits; total / per base)	14.559 / 0.809
Data sources	ChIP-Seq
Aligned words	583

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.954	0.962	0.927	0.935	0.942	0.951	4.685	4.737	239.703	272.854

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.170
HGNC	HGNC:27124
MGI
EntrezGene (human)	GeneID:148206 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN714_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96N38 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN714.H12INVITRO.0.P.D.pcm
PWM	ZN714.H12INVITRO.0.P.D.pwm
PFM	ZN714.H12INVITRO.0.P.D.pfm
Alignment	ZN714.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN714.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN714.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN714.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN714.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN714.H12INVITRO.0.P.D_homer_format_0.001.txt ZN714.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN714.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	66.0	230.0	195.0	92.0
02	96.0	268.0	106.0	113.0
03	34.0	272.0	113.0	164.0
04	85.0	79.0	233.0	186.0
05	42.0	85.0	333.0	123.0
06	159.0	349.0	35.0	40.0
07	227.0	120.0	213.0	23.0
08	2.0	2.0	290.0	289.0
09	2.0	4.0	6.0	571.0
10	29.0	149.0	386.0	19.0
11	1.0	578.0	3.0	1.0
12	1.0	1.0	0.0	581.0
13	7.0	2.0	530.0	44.0
14	4.0	572.0	1.0	6.0
15	8.0	71.0	12.0	492.0
16	53.0	223.0	223.0	84.0
17	112.0	330.0	73.0	68.0
18	89.0	185.0	87.0	222.0

PFM

	A	C	G	T
01	0.113	0.395	0.334	0.158
02	0.165	0.46	0.182	0.194
03	0.058	0.467	0.194	0.281
04	0.146	0.136	0.4	0.319
05	0.072	0.146	0.571	0.211
06	0.273	0.599	0.06	0.069
07	0.389	0.206	0.365	0.039
08	0.003	0.003	0.497	0.496
09	0.003	0.007	0.01	0.979
10	0.05	0.256	0.662	0.033
11	0.002	0.991	0.005	0.002
12	0.002	0.002	0.0	0.997
13	0.012	0.003	0.909	0.075
14	0.007	0.981	0.002	0.01
15	0.014	0.122	0.021	0.844
16	0.091	0.383	0.383	0.144
17	0.192	0.566	0.125	0.117
18	0.153	0.317	0.149	0.381

PWM

	A	C	G	T
01	-0.779	0.452	0.288	-0.454
02	-0.412	0.604	-0.314	-0.251
03	-1.421	0.619	-0.251	0.117
04	-0.532	-0.603	0.465	0.242
05	-1.218	-0.532	0.82	-0.168
06	0.086	0.867	-1.393	-1.265
07	0.439	-0.192	0.376	-1.79
08	-3.714	-3.714	0.683	0.679
09	-3.714	-3.271	-2.966	1.357
10	-1.572	0.022	0.967	-1.968
11	-4.04	1.37	-3.468	-4.04
12	-4.04	-4.04	-4.528	1.375
13	-2.842	-3.714	1.283	-1.173
14	-3.271	1.359	-4.04	-2.966
15	-2.732	-0.708	-2.383	1.209
16	-0.993	0.422	0.422	-0.543
17	-0.26	0.811	-0.681	-0.75
18	-0.486	0.236	-0.509	0.417

Standard thresholds

P-value	Threshold
0.001	3.04351
0.0005	4.24841
0.0001	6.74266