ZN713.H12INVIVO.0.SM.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN713.H12INVIVO.0.SM.D
Gene (human)	ZNF713 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	20
Consensus	nnMSACSACTGCCASSAMMn
GC content	55.09%
Information content (bits; total / per base)	17.757 / 0.888
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	8013

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.71	0.722	0.608	0.62	0.557	0.571
Overall, 2 experiments	best	0.737	0.75	0.621	0.635	0.565	0.58
Methyl HT-SELEX, 1 experiments	median	0.737	0.75	0.621	0.635	0.565	0.58
Methyl HT-SELEX, 1 experiments	best	0.737	0.75	0.621	0.635	0.565	0.58
Non-Methyl HT-SELEX, 1 experiments	median	0.682	0.694	0.595	0.605	0.549	0.562
Non-Methyl HT-SELEX, 1 experiments	best	0.682	0.694	0.595	0.605	0.549	0.562

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.14
HGNC	HGNC:22043
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	ZN713_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8N859 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	ZN713.H12INVIVO.0.SM.D.pcm
PWM	ZN713.H12INVIVO.0.SM.D.pwm
PFM	ZN713.H12INVIVO.0.SM.D.pfm
Alignment	ZN713.H12INVIVO.0.SM.D.words.tsv
Threshold to P-value map	ZN713.H12INVIVO.0.SM.D.thr
Motif in other formats
JASPAR format	ZN713.H12INVIVO.0.SM.D_jaspar_format.txt
MEME format	ZN713.H12INVIVO.0.SM.D_meme_format.meme
Transfac format	ZN713.H12INVIVO.0.SM.D_transfac_format.txt
Homer format	ZN713.H12INVIVO.0.SM.D_homer_format_0.001.txt ZN713.H12INVIVO.0.SM.D_homer_format_0.0005.txt ZN713.H12INVIVO.0.SM.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2203.25	2591.25	1211.25	2007.25
02	2062.0	1955.0	1198.0	2798.0
03	4585.0	2189.0	383.0	856.0
04	482.0	1161.0	6091.0	279.0
05	6640.0	976.0	129.0	268.0
06	722.0	6782.0	108.0	401.0
07	728.0	1080.0	5946.0	259.0
08	6577.0	1238.0	74.0	124.0
09	726.0	6738.0	430.0	119.0
10	484.0	989.0	93.0	6447.0
11	151.0	706.0	6815.0	341.0
12	585.0	7339.0	50.0	39.0
13	110.0	7804.0	35.0	64.0
14	6690.0	230.0	63.0	1030.0
15	368.0	6264.0	997.0	384.0
16	1091.0	1330.0	5464.0	128.0
17	6469.0	1034.0	103.0	407.0
18	5903.0	1162.0	393.0	555.0
19	5023.25	1349.25	856.25	784.25
20	1868.0	2793.0	2142.0	1210.0

PFM

	A	C	G	T
01	0.275	0.323	0.151	0.25
02	0.257	0.244	0.15	0.349
03	0.572	0.273	0.048	0.107
04	0.06	0.145	0.76	0.035
05	0.829	0.122	0.016	0.033
06	0.09	0.846	0.013	0.05
07	0.091	0.135	0.742	0.032
08	0.821	0.154	0.009	0.015
09	0.091	0.841	0.054	0.015
10	0.06	0.123	0.012	0.805
11	0.019	0.088	0.85	0.043
12	0.073	0.916	0.006	0.005
13	0.014	0.974	0.004	0.008
14	0.835	0.029	0.008	0.129
15	0.046	0.782	0.124	0.048
16	0.136	0.166	0.682	0.016
17	0.807	0.129	0.013	0.051
18	0.737	0.145	0.049	0.069
19	0.627	0.168	0.107	0.098
20	0.233	0.349	0.267	0.151

PWM

	A	C	G	T
01	0.095	0.257	-0.502	0.002
02	0.029	-0.024	-0.513	0.334
03	0.827	0.089	-1.65	-0.849
04	-1.421	-0.545	1.111	-1.964
05	1.198	-0.718	-2.727	-2.004
06	-1.019	1.219	-2.901	-1.604
07	-1.01	-0.617	1.087	-2.038
08	1.188	-0.481	-3.27	-2.765
09	-1.013	1.212	-1.535	-2.806
10	-1.417	-0.705	-3.047	1.168
11	-2.572	-1.041	1.224	-1.765
12	-1.228	1.298	-3.648	-3.884
13	-2.883	1.359	-3.986	-3.41
14	1.205	-2.156	-3.425	-0.664
15	-1.689	1.139	-0.697	-1.647
16	-0.607	-0.409	1.003	-2.734
17	1.171	-0.66	-2.947	-1.589
18	1.08	-0.544	-1.624	-1.281
19	0.919	-0.395	-0.848	-0.936
20	-0.07	0.332	0.067	-0.503

Standard thresholds

P-value	Threshold
0.001	2.11566
0.0005	3.31181
0.0001	5.84541