ZN708.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN708.H12RSNP.0.P.D
Gene (human)	ZNF708 (GeneCards)
Gene synonyms (human)	KOX8, ZNF15, ZNF15L1
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	24
Consensus	vvnvhvddvRRnAGGYACAGChnn
GC content	51.77%
Information content (bits; total / per base)	16.921 / 0.705
Data sources	ChIP-Seq
Aligned words	780

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.831	0.913	0.839	0.902	0.822	0.92	6.557	7.35	363.77	396.125

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.181
HGNC	HGNC:12945
MGI
EntrezGene (human)	GeneID:7562 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN708_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P17019 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN708.H12RSNP.0.P.D.pcm
PWM	ZN708.H12RSNP.0.P.D.pwm
PFM	ZN708.H12RSNP.0.P.D.pfm
Alignment	ZN708.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN708.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN708.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN708.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN708.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN708.H12RSNP.0.P.D_homer_format_0.001.txt ZN708.H12RSNP.0.P.D_homer_format_0.0005.txt ZN708.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	210.0	117.0	341.0	112.0
02	146.0	101.0	434.0	99.0
03	178.0	298.0	180.0	124.0
04	183.0	355.0	124.0	118.0
05	146.0	149.0	119.0	366.0
06	442.0	121.0	109.0	108.0
07	396.0	69.0	212.0	103.0
08	145.0	125.0	180.0	330.0
09	469.0	120.0	102.0	89.0
10	467.0	60.0	216.0	37.0
11	198.0	35.0	437.0	110.0
12	117.0	219.0	216.0	228.0
13	733.0	2.0	40.0	5.0
14	8.0	1.0	764.0	7.0
15	14.0	28.0	732.0	6.0
16	10.0	323.0	5.0	442.0
17	742.0	11.0	13.0	14.0
18	4.0	682.0	13.0	81.0
19	721.0	2.0	50.0	7.0
20	26.0	4.0	742.0	8.0
21	44.0	675.0	21.0	40.0
22	156.0	230.0	20.0	374.0
23	191.0	154.0	305.0	130.0
24	193.0	136.0	300.0	151.0

PFM

	A	C	G	T
01	0.269	0.15	0.437	0.144
02	0.187	0.129	0.556	0.127
03	0.228	0.382	0.231	0.159
04	0.235	0.455	0.159	0.151
05	0.187	0.191	0.153	0.469
06	0.567	0.155	0.14	0.138
07	0.508	0.088	0.272	0.132
08	0.186	0.16	0.231	0.423
09	0.601	0.154	0.131	0.114
10	0.599	0.077	0.277	0.047
11	0.254	0.045	0.56	0.141
12	0.15	0.281	0.277	0.292
13	0.94	0.003	0.051	0.006
14	0.01	0.001	0.979	0.009
15	0.018	0.036	0.938	0.008
16	0.013	0.414	0.006	0.567
17	0.951	0.014	0.017	0.018
18	0.005	0.874	0.017	0.104
19	0.924	0.003	0.064	0.009
20	0.033	0.005	0.951	0.01
21	0.056	0.865	0.027	0.051
22	0.2	0.295	0.026	0.479
23	0.245	0.197	0.391	0.167
24	0.247	0.174	0.385	0.194

PWM

	A	C	G	T
01	0.074	-0.505	0.555	-0.548
02	-0.287	-0.65	0.795	-0.67
03	-0.09	0.421	-0.079	-0.448
04	-0.063	0.595	-0.448	-0.497
05	-0.287	-0.266	-0.488	0.626
06	0.814	-0.472	-0.575	-0.584
07	0.704	-1.024	0.083	-0.631
08	-0.293	-0.44	-0.079	0.523
09	0.873	-0.48	-0.64	-0.774
10	0.868	-1.16	0.101	-1.627
11	0.015	-1.68	0.802	-0.566
12	-0.505	0.115	0.101	0.155
13	1.318	-3.983	-1.552	-3.385
14	-3.013	-4.301	1.359	-3.122
15	-2.53	-1.892	1.317	-3.245
16	-2.825	0.501	-3.385	0.814
17	1.33	-2.743	-2.596	-2.53
18	-3.547	1.246	-2.596	-0.867
19	1.301	-3.983	-1.337	-3.122
20	-1.961	-3.547	1.33	-3.013
21	-1.46	1.236	-2.161	-1.552
22	-0.221	0.164	-2.206	0.647
23	-0.021	-0.234	0.444	-0.401
24	-0.01	-0.357	0.428	-0.253

Standard thresholds

P-value	Threshold
0.001	2.27306
0.0005	3.49506
0.0001	6.06941