ZN708.H12INVITRO.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN708.H12INVITRO.1.P.D
Gene (human)	ZNF708 (GeneCards)
Gene synonyms (human)	KOX8, ZNF15, ZNF15L1
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	10
Consensus	AGGYACAGCh
GC content	59.26%
Information content (bits; total / per base)	12.733 / 1.273
Data sources	ChIP-Seq
Aligned words	1002

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.814	0.917	0.813	0.897	0.795	0.922	4.155	4.928	343.319	360.201

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.181
HGNC	HGNC:12945
MGI
EntrezGene (human)	GeneID:7562 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN708_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P17019 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN708.H12INVITRO.1.P.D.pcm
PWM	ZN708.H12INVITRO.1.P.D.pwm
PFM	ZN708.H12INVITRO.1.P.D.pfm
Alignment	ZN708.H12INVITRO.1.P.D.words.tsv
Threshold to P-value map	ZN708.H12INVITRO.1.P.D.thr
Motif in other formats
JASPAR format	ZN708.H12INVITRO.1.P.D_jaspar_format.txt
MEME format	ZN708.H12INVITRO.1.P.D_meme_format.meme
Transfac format	ZN708.H12INVITRO.1.P.D_transfac_format.txt
Homer format	ZN708.H12INVITRO.1.P.D_homer_format_0.001.txt ZN708.H12INVITRO.1.P.D_homer_format_0.0005.txt ZN708.H12INVITRO.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	890.0	1.0	104.0	7.0
02	11.0	7.0	956.0	28.0
03	43.0	42.0	900.0	17.0
04	13.0	437.0	15.0	537.0
05	909.0	38.0	41.0	14.0
06	23.0	902.0	16.0	61.0
07	847.0	5.0	129.0	21.0
08	16.0	5.0	971.0	10.0
09	47.0	891.0	27.0	37.0
10	162.0	386.0	65.0	389.0

PFM

	A	C	G	T
01	0.888	0.001	0.104	0.007
02	0.011	0.007	0.954	0.028
03	0.043	0.042	0.898	0.017
04	0.013	0.436	0.015	0.536
05	0.907	0.038	0.041	0.014
06	0.023	0.9	0.016	0.061
07	0.845	0.005	0.129	0.021
08	0.016	0.005	0.969	0.01
09	0.047	0.889	0.027	0.037
10	0.162	0.385	0.065	0.388

PWM

	A	C	G	T
01	1.263	-4.527	-0.869	-3.364
02	-2.987	-3.364	1.334	-2.138
03	-1.73	-1.752	1.274	-2.6
04	-2.841	0.554	-2.713	0.759
05	1.284	-1.848	-1.775	-2.775
06	-2.322	1.276	-2.655	-1.392
07	1.213	-3.624	-0.657	-2.407
08	-2.655	-3.624	1.35	-3.068
09	-1.644	1.264	-2.172	-1.874
10	-0.432	0.43	-1.33	0.438

Standard thresholds

P-value	Threshold
0.001	3.879115
0.0005	4.84446
0.0001	7.189945