ZN707.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN707.H12INVITRO.0.P.D
Gene (human)	ZNF707 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	vMhCCCYRCTCCYKGKhvhddhh
GC content	56.26%
Information content (bits; total / per base)	18.706 / 0.813
Data sources	ChIP-Seq
Aligned words	254

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (11)	0.955	0.995	0.958	0.995	0.958	0.999	12.138	16.232	486.0	566.076

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.51
HGNC	HGNC:27815
MGI
EntrezGene (human)	GeneID:286075 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN707_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96C28 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN707.H12INVITRO.0.P.D.pcm
PWM	ZN707.H12INVITRO.0.P.D.pwm
PFM	ZN707.H12INVITRO.0.P.D.pfm
Alignment	ZN707.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN707.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN707.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN707.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN707.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN707.H12INVITRO.0.P.D_homer_format_0.001.txt ZN707.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN707.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	88.0	83.0	59.0	24.0
02	45.0	165.0	18.0	26.0
03	192.0	22.0	18.0	22.0
04	6.0	234.0	1.0	13.0
05	1.0	247.0	2.0	4.0
06	4.0	236.0	1.0	13.0
07	22.0	166.0	10.0	56.0
08	170.0	22.0	53.0	9.0
09	8.0	228.0	0.0	18.0
10	0.0	4.0	0.0	250.0
11	2.0	226.0	0.0	26.0
12	14.0	224.0	1.0	15.0
13	4.0	70.0	6.0	174.0
14	13.0	3.0	167.0	71.0
15	19.0	8.0	226.0	1.0
16	20.0	35.0	37.0	162.0
17	108.0	78.0	12.0	56.0
18	47.0	126.0	61.0	20.0
19	35.0	82.0	23.0	114.0
20	99.0	28.0	58.0	69.0
21	97.0	37.0	50.0	70.0
22	82.0	41.0	31.0	100.0
23	34.0	55.0	33.0	132.0

PFM

	A	C	G	T
01	0.346	0.327	0.232	0.094
02	0.177	0.65	0.071	0.102
03	0.756	0.087	0.071	0.087
04	0.024	0.921	0.004	0.051
05	0.004	0.972	0.008	0.016
06	0.016	0.929	0.004	0.051
07	0.087	0.654	0.039	0.22
08	0.669	0.087	0.209	0.035
09	0.031	0.898	0.0	0.071
10	0.0	0.016	0.0	0.984
11	0.008	0.89	0.0	0.102
12	0.055	0.882	0.004	0.059
13	0.016	0.276	0.024	0.685
14	0.051	0.012	0.657	0.28
15	0.075	0.031	0.89	0.004
16	0.079	0.138	0.146	0.638
17	0.425	0.307	0.047	0.22
18	0.185	0.496	0.24	0.079
19	0.138	0.323	0.091	0.449
20	0.39	0.11	0.228	0.272
21	0.382	0.146	0.197	0.276
22	0.323	0.161	0.122	0.394
23	0.134	0.217	0.13	0.52

PWM

	A	C	G	T
01	0.32	0.263	-0.072	-0.938
02	-0.336	0.942	-1.208	-0.863
03	1.092	-1.021	-1.208	-1.021
04	-2.173	1.289	-3.304	-1.506
05	-3.304	1.342	-2.953	-2.489
06	-2.489	1.297	-3.304	-1.506
07	-1.021	0.948	-1.74	-0.123
08	0.971	-1.021	-0.177	-1.832
09	-1.934	1.263	-3.847	-1.208
10	-3.847	-2.489	-3.847	1.354
11	-2.953	1.254	-3.847	-0.863
12	-1.439	1.245	-3.304	-1.376
13	-2.489	0.095	-2.173	0.994
14	-1.506	-2.695	0.954	0.109
15	-1.158	-1.934	1.254	-3.304
16	-1.11	-0.578	-0.525	0.923
17	0.522	0.202	-1.579	-0.123
18	-0.293	0.675	-0.039	-1.11
19	-0.578	0.251	-0.979	0.576
20	0.436	-0.792	-0.089	0.081
21	0.416	-0.525	-0.233	0.095
22	0.251	-0.426	-0.695	0.446
23	-0.606	-0.14	-0.635	0.721

Standard thresholds

P-value	Threshold
0.001	1.97526
0.0005	3.19991
0.0001	5.79196