ZN704.H12RSNP.0.SM.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN704.H12RSNP.0.SM.D
Gene (human)	ZN704 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Zn704
Gene synonyms (mouse)	Gig1, Zfp704
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	16
Consensus	ndnRSSGGCCGGYdnn
GC content	73.66%
Information content (bits; total / per base)	13.421 / 0.839
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	6310

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.912	0.915	0.798	0.808	0.668	0.696
Overall, 2 experiments	best	0.998	0.996	0.933	0.934	0.757	0.786
Methyl HT-SELEX, 1 experiments	median	0.826	0.834	0.662	0.683	0.578	0.606
Methyl HT-SELEX, 1 experiments	best	0.826	0.834	0.662	0.683	0.578	0.606
Non-Methyl HT-SELEX, 1 experiments	median	0.998	0.996	0.933	0.934	0.757	0.786
Non-Methyl HT-SELEX, 1 experiments	best	0.998	0.996	0.933	0.934	0.757	0.786

TF superclass	Yet undefined DNA-binding domains {0} (TFClass)
TF class	Uncharacterized {0.0} (TFClass)
TF family	Unannotated {0.0.9} (TFClass)
TF subfamily	{0.0.9.0} (TFClass)
TFClass ID	TFClass: 0.0.9.0.2
HGNC	HGNC:32291
MGI	MGI:2180715
EntrezGene (human)	GeneID:619279 (SSTAR profile)
EntrezGene (mouse)	GeneID:170753 (SSTAR profile)
UniProt ID (human)	ZN704_HUMAN
UniProt ID (mouse)	ZN704_MOUSE
UniProt AC (human)	Q6ZNC4 (TFClass)
UniProt AC (mouse)	Q9ERQ3 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	ZN704.H12RSNP.0.SM.D.pcm
PWM	ZN704.H12RSNP.0.SM.D.pwm
PFM	ZN704.H12RSNP.0.SM.D.pfm
Alignment	ZN704.H12RSNP.0.SM.D.words.tsv
Threshold to P-value map	ZN704.H12RSNP.0.SM.D.thr
Motif in other formats
JASPAR format	ZN704.H12RSNP.0.SM.D_jaspar_format.txt
MEME format	ZN704.H12RSNP.0.SM.D_meme_format.meme
Transfac format	ZN704.H12RSNP.0.SM.D_transfac_format.txt
Homer format	ZN704.H12RSNP.0.SM.D_homer_format_0.001.txt ZN704.H12RSNP.0.SM.D_homer_format_0.0005.txt ZN704.H12RSNP.0.SM.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1162.25	1216.25	2390.25	1541.25
02	1574.75	678.75	2710.75	1345.75
03	998.0	1230.0	2066.0	2016.0
04	1423.0	276.0	4137.0	474.0
05	427.0	4165.0	1376.0	342.0
06	633.0	4463.0	821.0	393.0
07	154.0	108.0	5755.0	293.0
08	27.0	3.0	6276.0	4.0
09	27.0	5422.0	847.0	14.0
10	875.0	5418.0	1.0	16.0
11	1.0	0.0	6307.0	2.0
12	1.0	0.0	6308.0	1.0
13	199.0	1944.0	638.0	3529.0
14	1957.0	261.0	3212.0	880.0
15	1560.5	847.5	1895.5	2006.5
16	1471.0	1186.0	2408.0	1245.0

PFM

	A	C	G	T
01	0.184	0.193	0.379	0.244
02	0.25	0.108	0.43	0.213
03	0.158	0.195	0.327	0.319
04	0.226	0.044	0.656	0.075
05	0.068	0.66	0.218	0.054
06	0.1	0.707	0.13	0.062
07	0.024	0.017	0.912	0.046
08	0.004	0.0	0.995	0.001
09	0.004	0.859	0.134	0.002
10	0.139	0.859	0.0	0.003
11	0.0	0.0	1.0	0.0
12	0.0	0.0	1.0	0.0
13	0.032	0.308	0.101	0.559
14	0.31	0.041	0.509	0.139
15	0.247	0.134	0.3	0.318
16	0.233	0.188	0.382	0.197

PWM

	A	C	G	T
01	-0.305	-0.26	0.415	-0.023
02	-0.002	-0.842	0.541	-0.159
03	-0.457	-0.248	0.269	0.245
04	-0.103	-1.737	0.963	-1.199
05	-1.303	0.97	-0.136	-1.524
06	-0.911	1.039	-0.652	-1.386
07	-2.314	-2.663	1.293	-1.677
08	-3.991	-5.719	1.38	-5.542
09	-3.991	1.234	-0.621	-4.581
10	-0.588	1.233	-6.206	-4.464
11	-6.206	-6.582	1.385	-5.933
12	-6.206	-6.582	1.385	-6.206
13	-2.061	0.209	-0.903	0.804
14	0.215	-1.792	0.71	-0.583
15	-0.011	-0.62	0.183	0.24
16	-0.07	-0.285	0.422	-0.236

Standard thresholds

P-value	Threshold
0.001	3.18111
0.0005	4.53246
0.0001	7.08781